(Q30375642)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

A network of molecular switches controls the activation of the two-component response regulator NtrC (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

4

Vijay S Pande

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

author name string

Dan K Vanatta

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Morgan Lawrenz

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

language of work or name

English

0 references

publication date

15 June 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

page(s)

7283

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

Large conformational changes in proteins: signaling and other functions

17 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Ligand binding and micro-switches in 7TM receptor structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Protein kinases: evolution of dynamic regulatory proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Two-component signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Structure of a transiently phosphorylated switch in bacterial signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

High-resolution solution structure of the beryllofluoride-activated NtrC receiver domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Segmented transition pathway of the signaling protein nitrogen regulatory protein C

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Evidence against the "Y-T coupling" mechanism of activation in the response regulator NtrC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Self-guided Langevin dynamics study of regulatory interactions in NtrC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Conformational switching upon phosphorylation: a predictive framework based on energy landscape principles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Finding transition pathways using the string method with swarms of trajectories

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Coarse-grained dynamics of the receiver domain of NtrC: fluctuations, correlations and implications for allosteric cooperativity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Characterization and rapid sampling of protein folding Markov state model topologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

COMPUTING: Screen Savers of the World Unite!

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Markov models of molecular kinetics: generation and validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Markov state models provide insights into dynamic modulation of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

NMR structure of activated CheY

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Crystal structures of CheY mutants Y106W and T87I/Y106W. CheY activation correlates with movement of residue 106

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Functional dynamics of response regulators using NMR relaxation techniques.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Transient non-native hydrogen bonds promote activation of a signaling protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Principles: receptor theory in pharmacology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Allosteric mechanisms of signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Free energy landscape of activation in a signalling protein at atomic resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

To milliseconds and beyond: challenges in the simulation of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Activation pathway of Src kinase reveals intermediate states as targets for drug design

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Building Markov state models along pathways to determine free energies and rates of transitions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Transition networks for modeling the kinetics of conformational change in macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Cloud computing approaches for prediction of ligand binding poses and pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Complex pathways in folding of protein G explored by simulation and experiment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Conserve Water: A Method for the Analysis of Solvent in Molecular Dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Scalable molecular dynamics with NAMD

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Comparison of multiple Amber force fields and development of improved protein backbone parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Canonical sampling through velocity rescaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

VMD: visual molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

The NumPy Array: A Structure for Efficient Numerical Computation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Progress and challenges in the automated construction of Markov state models for full protein systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Markov state models of biomolecular conformational dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Probability distributions of molecular observables computed from Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

MSMBuilder2: Modeling Conformational Dynamics at the Picosecond to Millisecond Scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Transition-path theory and path-finding algorithms for the study of rare events

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

Pathways for conformational change in nitrogen regulatory protein C from discrete path sampling

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26073186

12 December 2020

inferred from PubMed ID database lookup

Molecular dynamic simulations of the N-terminal receiver domain of NtrC reveal intrinsic conformational flexibility in the inactive state

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26073186

12 December 2020

inferred from PubMed ID database lookup

Two-state allosteric behavior in a single-domain signaling protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26073186

12 December 2020

inferred from PubMed ID database lookup

An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

7 January 2021

inferred from DOI database lookup

Python: An Ecosystem for Scientific Computing

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8283

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NCOMMS8283

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26073186%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

17 February 2020

ADS bibcode

2015NatCo...6.7283V

0 references

1045874866

0 references

1 reference