(Q37410885)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

3

Eric Vanden-Eijnden

1 reference

11 February 2020

2

Christof Schütte

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

author name string

Frank Noé

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Lothar Reich

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

language of work or name

English

0 references

publication date

3 November 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

11 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

volume

106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

issue

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

page(s)

19011-19016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

maintained by WikiProject

11 February 2020

WikiProject Mathematics

0 references

cites work

Reactive flux and folding pathways in network models of coarse-grained protein dynamics

1 reference

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The protein folding problem

6 September 2017

1 reference

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Ten-microsecond molecular dynamics simulation of a fast-folding WW domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

An experimental survey of the transition between two-state and downhill protein folding scenarios

6 September 2017

1 reference

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Combining experiment and simulation in protein folding: closing the gap for small model systems

6 September 2017

1 reference

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Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece

6 September 2017

1 reference

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Exploring subdomain cooperativity in T4 lysozyme II: uncovering the C-terminal subdomain as a hidden intermediate in the kinetic folding pathway

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Malleability of protein folding pathways: a simple reason for complex behaviour

6 September 2017

1 reference

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Structure-function-folding relationship in a WW domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

GROMACS: fast, flexible, and free

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

A protein folding pathway with multiple folding intermediates at atomic resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Hidden complexity of free energy surfaces for peptide (protein) folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

An experimentally determined protein folding energy landscape

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Absolute comparison of simulated and experimental protein-folding dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

On the simulation of protein folding by short time scale molecular dynamics and distributed computing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Folding simulations of a three-stranded antiparallel beta -sheet peptide

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Multiple pathways on a protein-folding energy landscape: kinetic evidence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Fast and slow tracks in lysozyme folding: insight into the role of domains in the folding process

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

From Levinthal to pathways to funnels

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Navigating the folding routes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Transition states in protein folding kinetics: modeling phi-values of small beta-sheet proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Probability distributions of molecular observables computed from Markov models.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Coarse master equations for peptide folding dynamics.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Hierarchical analysis of conformational dynamics in biomolecules: transition networks of metastable states.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Switching two-state to three-state kinetics in the helical protein Im9 via the optimisation of stabilising non-native interactions by design.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772816

Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0905466106

On the transition coordinate for protein folding

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0905466106

The folding mechanism of a beta-sheet: the WW domain

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19887634

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0905466106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

19887634

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19887634%20AND%20SRC:MED&resulttype=core&format=json