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Protein structure prediction: when is it useful?
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
review article
1 reference
stated in
Europe PubMed Central
title
Protein structure prediction: when is it useful?
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
main subject
protein structure prediction
0 references
protein structure
0 references
author name string
Yang Zhang
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
publication date
25 March 2009
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stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
volume
19
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stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
page(s)
145-155
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
issue
2
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
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A random mutagenesis approach to isolate dominant-negative yeast sec1 mutants reveals a functional role for domain 3a in yeast and mammalian Sec1/Munc18 proteins
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Protein model quality assessment prediction by combining fragment comparisons and a consensus C(alpha) contact potential
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Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home
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Assessment of CASP7 structure predictions for template free targets
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Benchmarking consensus model quality assessment for protein fold recognition.
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Assessment of predictions submitted for the CASP7 domain prediction category.
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Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology
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Can molecular dynamics simulations provide high-resolution refinement of protein structure?
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An integrated in silico 3D model-driven discovery of a novel, potent, and selective amidosulfonamide 5-HT1A agonist (PRX-00023) for the treatment of anxiety and depression
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Physically realistic homology models built with ROSETTA can be more accurate than their templates
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20 June 2018
Structure modeling of all identified G protein-coupled receptors in the human genome
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20 June 2018
On the origin and highly likely completeness of single-domain protein structures.
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PubMed Central
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20 June 2018
The impact of structural genomics: expectations and outcomes
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20 June 2018
Structural genomics analysis of alternative splicing and application to isoform structure modeling
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
Evaluating the usefulness of protein structure models for molecular replacement.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
TM-align: a protein structure alignment algorithm based on the TM-score
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
The protein structure prediction problem could be solved using the current PDB library
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
Scoring function for automated assessment of protein structure template quality
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
Automated structure prediction of weakly homologous proteins on a genomic scale
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment.
1 reference
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20 June 2018
LGA: A method for finding 3D similarities in protein structures
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20 June 2018
Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
Molecular dynamics in the endgame of protein structure prediction.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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20 June 2018
The Protein Data Bank
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20 June 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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20 June 2018
Comparative Modeling in Structural Genomics
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26 November 2018
Modeling and analyzing three-dimensional structures of human disease proteins
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26 November 2018
Identification and analysis of deleterious human SNPs.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673339
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26 November 2018
Quantifying the similarities within fold space.
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PubMed Central
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26 November 2018
Completeness in structural genomics.
1 reference
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PubMed Central
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26 November 2018
Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking
1 reference
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https://pubmed.ncbi.nlm.nih.gov/19327982
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Coordinated Up-regulation by hypoxia of adrenomedullin and one of its putative receptors (RDC-1) in cells of the rat blood-brain barrier
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19327982
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.SBI.2009.02.005
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
PMCID
2673339
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
PubMed ID
19327982
1 reference
stated in
Europe PubMed Central
PMCID
2673339
retrieved
18 August 2017
ResearchGate publication ID
24240501
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