(Q30387579)

15 August 2017

Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data (English)

1 reference

15 August 2017

Anne Bruun Krøigård

1

0 references

Martin J Larsen

object named as

Martin Jakob Larsen

5

0 references

author name string

Mads Thomassen

2

1 reference

15 August 2017

Anne-Vibeke Lænkholm

3

1 reference

15 August 2017

Torben A Kruse

4

1 reference

15 August 2017

language of work or name

English

0 references

publication date

22 March 2016

1 reference

15 August 2017

1 reference

15 August 2017

11

1 reference

15 August 2017

3

1 reference

15 August 2017

e0151664

1 reference

Creative Commons Attribution 4.0 International

15 August 2017

start time

22 March 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Optimizing cancer genome sequencing and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Clonal expansion and linear genome evolution through breast cancer progression from pre-invasive stages to asynchronous metastasis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Combining calls from multiple somatic mutation-callers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Comparison of somatic mutation calling methods in amplicon and whole exome sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Virmid: accurate detection of somatic mutations with sample impurity inference

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

A comparative analysis of algorithms for somatic SNV detection in cancer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Accurately identifying low-allelic fraction variants in single samples with next-generation sequencing: applications in tumor subclone resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Shimmer: detection of genetic alterations in tumors using next-generation sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

A survey of tools for variant analysis of next-generation genome sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

SomaticSniper: identification of somatic point mutations in whole genome sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Genotype and SNP calling from next-generation sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

Sequence-specific error profile of Illumina sequencers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

A framework for variation discovery and genotyping using next-generation DNA sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4803342

10.1371/JOURNAL.PONE.0151664

20 June 2018

Identifiers

DOI

1 reference

15 August 2017

0 references

1 reference

15 August 2017

PubMed publication ID

27002637

1 reference