(Q30388027)

http://europepmc.org/abstract/PMC/5817996

24 February 2018

title

A benchmark testing ground for integrating homology modeling and protein docking (English)

1 reference

http://europepmc.org/abstract/PMC/5817996

24 February 2018

author

Dima Kozakov

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Shoshana Wodak

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Alexandre Bonvin

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sandor Vajda

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Ora Schueler-Furman

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

author name string

Tanggis Bohnuud

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Lingqi Luo

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Zhiping Weng

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

language of work or name

English

0 references

publication date

12 May 2016

1 reference

http://europepmc.org/abstract/PMC/5817996

24 February 2018

published in

Proteins

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

85

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

10-16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

High-resolution protein-protein docking by global optimization: recent advances and future challenges

5 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Protein models docking benchmark 2.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Critical assessment of methods of protein structure prediction (CASP)--round x

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Docking, scoring, and affinity prediction in CAPRI.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Templates are available to model nearly all complexes of structurally characterized proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

A structure-based benchmark for protein-protein binding affinity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

On the use of structural templates for high-resolution docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

BLAST+: architecture and applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Pushing structural information into the yeast interactome by high-throughput protein docking experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Outcome of a workshop on applications of protein models in biomedical research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

DOCKGROUND protein-protein docking decoy set.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Protein-protein docking benchmark version 3.0.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Protein-Protein Docking Benchmark 2.0: an update

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

The protein structure prediction problem could be solved using the current PDB library

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

MUSCLE: multiple sequence alignment with high accuracy and high throughput

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

The CATH database: an extended protein family resource for structural and functional genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

EMBOSS: the European Molecular Biology Open Software Suite

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

A general method applicable to the search for similarities in the amino acid sequence of two proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

The relation between the divergence of sequence and structure in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5817996

Docking and scoring protein interactions: CAPRI 2009

20 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25063

Defining the limits of homology modeling in information-driven protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25063

A protein-protein docking benchmark.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25063

Protein–protein docking benchmark version 4.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25063

21 January 2018

Identifiers

DOI

10.1002/PROT.25063

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27172383%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

27172383

1 reference