(Q30392851)

21 June 2017

title

iFC²: an integrated web-server for improved prediction of protein structural class, fold type, and secondary structure content (English)

1 reference

protein structure prediction

21 June 2017

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Lukasz Kurgan

4

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author name string

Ke Chen

series ordinal

1

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21 June 2017

Wojciech Stach

series ordinal

2

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21 June 2017

Leila Homaeian

series ordinal

3

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21 June 2017

publication date

21 August 2010

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21 June 2017

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21 June 2017

volume

40

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21 June 2017

issue

3

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21 June 2017

page(s)

963-973

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NETASA: neural network based prediction of solvent accessibility.

21 June 2017

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21 January 2018

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Prediction of tight turns and their types in proteins.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Why don't humans get scrapie from eating sheep? A possible explanation based on secondary structure predictions

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Distinguishing enzyme structures from non-enzymes without alignments

21 January 2018

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Predicting enzyme class from protein structure without alignments.

21 January 2018

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Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties.

21 January 2018

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21 January 2018

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Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network.

21 January 2018

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21 January 2018

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Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.

21 January 2018

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21 January 2018

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A simple statistical method for discriminating outer membrane proteins with better accuracy

21 January 2018

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A statistical method for predicting protein unfolding rates from amino acid sequence.

21 January 2018

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Prediction of protein secondary structure content for the twilight zone sequences.

21 January 2018

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Using support vector machine to predict beta- and gamma-turns in proteins

21 January 2018

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Prediction of folding transition-state position (betaT) of small, two-state proteins from local secondary structure content.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.

21 January 2018

1 reference

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Fold classification based on secondary structure--how much is gained by including loop topology?

21 January 2018

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Prediction of protein folding rates from primary sequences using hybrid sequence representation

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks

21 January 2018

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Predicting absolute contact numbers of native protein structure from amino acid sequence.

21 January 2018

1 reference

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On the relation between the predicted secondary structure and the protein size

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein structural class for the twilight zone sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Secondary structure-based assignment of the protein structural classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein secondary structure content using amino acid composition and evolutionary information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein structure class by coupling improved genetic algorithm and support vector machine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Improved prediction of lysine acetylation by support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Estimation of affinity of HLA-A*0201 restricted CTL epitope based on the SCORE function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein secondary structure content.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

The PSIPRED protein structure prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Meta prediction of protein crystallization propensity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

A further step toward an optimal ensemble of classifiers for peptide classification, a case study: HIV protease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Two-stage support vector regression approach for predicting accessible surface areas of amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Porter: a new, accurate server for protein secondary structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Improved prediction of the number of residue contacts in proteins by recurrent neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Protein flexibility and intrinsic disorder

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Building multiclass classifiers for remote homology detection and fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Review: protein secondary structure prediction continues to rise.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

The PredictProtein server

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Highly accurate and consistent method for prediction of helix and strand content from primary protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Protein flexibility and rigidity predicted from sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Ensemble classifier for protein fold pattern recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Protein contact order prediction from primary sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Moderate exercise and chronic stress produce counteractive effects on different areas of the brain by acting through various neurotransmitter receptor subtypes: a hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Predicting residue-wise contact orders in proteins by support vector regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Application of amino acid occurrence for discriminating different folding types of globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

PRINTR: prediction of RNA binding sites in proteins using SVM and profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

RAPTOR: optimal protein threading by linear programming

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Real-value prediction of backbone torsion angles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Better prediction of protein contact number using a support vector regression analysis of amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Quantifying the relationship of protein burying depth and sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of protein B-factor profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Template-based modeling and free modeling by I-TASSER in CASP7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Improved method for predicting beta-turn using support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Sequence based residue depth prediction using evolutionary information and predicted secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

On the relation between residue flexibility and local solvent accessibility in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Analysis of TASSER-based CASP7 protein structure prediction results.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Sequence based prediction of relative solvent accessibility using two-stage support vector regression with confidence values

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-010-0721-1

10.1007/S00726-010-0721-1

21 January 2018

Identifiers

DOI

1 reference

21 June 2017

1 reference