(Q30394016)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

title

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Carlo Baldassi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Andrea Pagnani

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

author name string

Thomas Gueudré

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Marco Zamparo

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

language of work or name

English

0 references

publication date

11 October 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

25 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

volume

113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

issue

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

page(s)

12186-12191

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

Inferring interaction partners from protein sequences

25 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Predicting Protein-Protein Interactions from the Molecular to the Proteome Level

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

The Pfam protein families database: towards a more sustainable future

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Sequence co-evolution gives 3D contacts and structures of protein complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Protein-protein interaction detection: methods and analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

iPfam: a database of protein family and domain interactions found in the Protein Data Bank

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Emerging methods in protein co-evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

High-resolution protein complexes from integrating genomic information with molecular simulation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Identification of direct residue contacts in protein-protein interaction by message passing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Deciphering protein-protein interactions. Part I. Experimental techniques and databases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

The crystal structure of anthranilate synthase from Sulfolobus solfataricus: functional implications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Detecting protein function and protein-protein interactions from genome sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Profile hidden Markov models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Conservation of gene order: a fingerprint of proteins that physically interact

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Who's your neighbor? New computational approaches for functional genomics

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

Two-component signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

Crystal structures of a new class of allosteric effectors complexed to tryptophan synthase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

Bacitracin sensing in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

HMMER web server: 2015 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

Aligning graphs and finding substructures by a cavity approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1607570113

Predicting functional linkages from gene fusions with confidence

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087065

Interactions between the YycFG and PhoPR two-component systems in Bacillus subtilis: the PhoR kinase phosphorylates the non-cognate YycF response regulator upon phosphate limitation

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27729520

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1607570113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27729520%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference