(Q30492585)

18 October 2017

High-resolution protein complexes from integrating genomic information with molecular simulation (English)

1 reference

18 October 2017

2

1 reference

18 October 2017

4

1 reference

18 October 2017

3

José N Onuchic

1 reference

18 October 2017

Alexander Schug

1

1 reference

PMCID

2799721

18 October 2017

Hendrik Szurmant

series ordinal

5

1 reference

PMCID

2799721

18 October 2017

language of work or name

English

0 references

publication date

17 December 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

18 October 2017

1 reference

18 October 2017

106

1 reference

18 October 2017

22124-22129

1 reference

18 October 2017

52

1 reference

Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction

18 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Biological insights from structures of two-component proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Identification of direct residue contacts in protein-protein interaction by message passing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Rewiring the specificity of two-component signal transduction systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Protein structure modeling with MODELLER

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Are current molecular dynamics force fields too helical?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Reaching for high-hanging fruit in drug discovery at protein-protein interfaces

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

The Pfam protein families database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Mutations as trapdoors to two competing native conformations of the Rop-dimer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Sensor complexes regulating two-component signal transduction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Features of protein-protein interactions in two-component signaling deduced from genomic libraries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Speeding up parallel GROMACS on high-latency networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Predominantly buried residues in the response regulator Spo0F influence specific sensor kinase recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

The crystal structure of beryllofluoride Spo0F in complex with the phosphotransferase Spo0B represents a phosphotransfer pretransition state

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Structure of the entire cytoplasmic portion of a sensor histidine-kinase protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

GROMACS: fast, flexible, and free

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

A structural model of polyglutamine determined from a host-guest method combining experiments and landscape theory

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Theory of protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

The crystal structure of the phosphorylation domain in PhoP reveals a functional tandem association mediated by an asymmetric interface

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Keeping signals straight in phosphorelay signal transduction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Histidine kinases and response regulator proteins in two-component signaling systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

RefSeq and LocusLink: NCBI gene-centered resources

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

A transient interaction between two phosphorelay proteins trapped in a crystal lattice reveals the mechanism of molecular recognition and phosphotransfer in signal transduction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Two-component and phosphorelay signal transduction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Formation of a novel four-helix bundle and molecular recognition sites by dimerization of a response regulator phosphotransferase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Funnels, pathways, and the energy landscape of protein folding: a synthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

The Energy Landscapes and Motions of Proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Optimizing physical energy functions for protein folding.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Metals in the sporulation phosphorelay: manganese binding by the response regulator Spo0F.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Geometrical features of the protein folding mechanism are a robust property of the energy landscape: a detailed investigation of several reduced models

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Identification of a novel two component system in Thermotoga maritima. Complex stoichiometry and crystallization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Robustness and generalization of structure-based models for protein folding and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Temperature dependence of the distribution of the first passage time: results from discontinuous molecular dynamics simulations of an all-atom model of the second beta-hairpin fragment of protein G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple-minima problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

The role of sidechain packing and native contact interactions in folding: Discontinuous molecular dynamics folding simulations of an all-atom Gō model of fragment B of Staphylococcal protein A

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912100106

Molecular recognition in signal transduction: the interaction surfaces of the Spo0F response regulator with its cognate phosphorelay proteins revealed by alanine scanning mutagenesis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799721

Reproducible Protein Folding with the Stochastic Tunneling Method

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20018738

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20018738

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0912100106

1 reference

18 October 2017

0 references

1 reference

18 October 2017

1 reference

PMCID

2799721