(Q42687387)

4 November 2017

Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models (English)

1 reference

4 November 2017

4

1 reference

4 November 2017

5

Erik Aurell

1 reference

4 November 2017

Magnus Ekeberg

1

1 reference

4 November 2017

Cecilia Lövkvist

series ordinal

2

1 reference

4 November 2017

Yueheng Lan

series ordinal

3

1 reference

4 November 2017

language of work or name

English

0 references

publication date

11 January 2013

1 reference

4 November 2017

1 reference

4 November 2017

87

1 reference

4 November 2017

1

1 reference

4 November 2017

012707

1 reference

Identification of direct residue contacts in protein-protein interaction by message passing

4 November 2017

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Protein 3D structure computed from evolutionary sequence variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Genomics-aided structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Disentangling direct from indirect co-evolution of residues in protein alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Learning generative models for protein fold families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Weak pairwise correlations imply strongly correlated network states in a neural population

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Learning by message passing in networks of discrete synapses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Statistical physics of pairwise probability models

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Constraint satisfaction problems and neural networks: A statistical physics perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Adaptive cluster expansion for inferring boltzmann machines with noisy data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Mean-field theory for the inverse Ising problem at low temperatures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Inverse Ising inference using all the data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

A Learning Algorithm for Boltzmann Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Reorganizing the protein space at the Universal Protein Resource (UniProt)

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

The Protein Data Bank at 40: reflecting on the past to prepare for the future

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Evolutionarily conserved pathways of energetic connectivity in protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Influence of conservation on calculations of amino acid covariance in multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

High-resolution protein complexes from integrating genomic information with molecular simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Three-dimensional structures of membrane proteins from genomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Sufficient statistics and intrinsic accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

On distributions admitting a sufficient statistic

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Information geometry of mean-field approximation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Training products of experts by minimizing contrastive divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

Inference algorithms for gene networks: a statistical mechanics analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.87.012707

10.1103/PHYSREVE.87.012707

21 January 2018

Identifiers

DOI

1 reference

4 November 2017

0 references

1 reference

1 reference