(Q30394590)

21 June 2017

title

Reliable protein structure refinement using a physical energy function (English)

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21 June 2017

Matthew S Lin

1

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21 June 2017

Teresa Head-Gordon

series ordinal

2

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21 June 2017

publication date

5 October 2010

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Journal of Computational Chemistry

21 June 2017

published in

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21 June 2017

volume

32

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21 June 2017

issue

4

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21 June 2017

page(s)

709-717

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Critical assessment of methods of protein structure prediction-Round VII

21 June 2017

cites work

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Critical assessment of methods of protein structure prediction (CASP)--round 6.

21 January 2018

1 reference

Critical assessment of methods of protein structure prediction (CASP)-round V.

21 January 2018

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TOUCHSTONE II: a new approach to ab initio protein structure prediction

21 January 2018

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Automated structure prediction of weakly homologous proteins on a genomic scale

21 January 2018

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21 January 2018

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Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.

21 January 2018

1 reference

Toward high-resolution de novo structure prediction for small proteins.

21 January 2018

1 reference

Protein structure prediction and structural genomics

21 January 2018

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Molecular dynamics in the endgame of protein structure prediction.

21 January 2018

1 reference

2.1 and 1.8 A average C(alpha) RMSD structure predictions on two small proteins, HP-36 and s15.

21 January 2018

1 reference

All-Atom Structure Prediction and Folding Simulations of a Stable Protein

21 January 2018

1 reference

Refinement of homology-based protein structures by molecular dynamics simulation techniques

21 January 2018

1 reference

The protein structure prediction problem could be solved using the current PDB library

21 January 2018

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Physically realistic homology models built with ROSETTA can be more accurate than their templates

21 January 2018

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Can molecular dynamics simulations provide high-resolution refinement of protein structure?

21 January 2018

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Progress and challenges in high-resolution refinement of protein structure models.

21 January 2018

1 reference

Protein model refinement using an optimized physics-based all-atom force field

21 January 2018

1 reference

Development of a physics-based force field for the scoring and refinement of protein models

21 January 2018

1 reference

Solvent dramatically affects protein structure refinement.

21 January 2018

1 reference

Near-native structure refinement using in vacuo energy minimization.

21 January 2018

1 reference

Hydrophobic potential of mean force as a solvation function for protein structure prediction.

21 January 2018

1 reference

Improved Energy Selection of Nativelike Protein Loops from Loop Decoys.

21 January 2018

1 reference

Comparison of multiple Amber force fields and development of improved protein backbone parameters

21 January 2018

1 reference

Exploring protein native states and large-scale conformational changes with a modified generalized born model

21 January 2018

1 reference

A physical approach to protein structure prediction

21 January 2018

1 reference

Minimalist models for protein folding and design

21 January 2018

1 reference

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

21 January 2018

1 reference

A Novel Approach to Decoy Set Generation: Designing a Physical Energy Function Having Local Minima with Native Structure Characteristics

21 January 2018

1 reference

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.

21 January 2018

1 reference

Assessment of CASP7 predictions in the high accuracy template-based modeling category

21 January 2018

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Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home

21 January 2018

1 reference

On the limited memory BFGS method for large scale optimization

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JCC.21664

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21 June 2017

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DBLP Dataset 2021-01-02

28 January 2021

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