(Q30398441)

21 June 2017

title

HIPPI: highly accurate protein family classification with ensembles of HMMs (English)

1 reference

21 June 2017

1 reference

Siavash Mirarab

3

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Tandy Warnow

series ordinal

4

object named as

Tandy Warnow

1 reference

21 June 2017

Nam-Phuong Nguyen

1

1 reference

21 June 2017

Michael Nute

series ordinal

2

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21 June 2017

language of work or name

English

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publication date

11 November 2016

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21 June 2017

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21 June 2017

volume

17

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21 June 2017

issue

Suppl 10

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21 June 2017

page(s)

765

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https://scigraph.springernature.com/pub.10.1186/s12864-016-3097-0

21 June 2017

exact match

0 references

cites work

TIGRFAMs: a protein family resource for the functional identification of proteins

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Protein family classification and functional annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Automated protein subfamily identification and classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Metagenomic microbial community profiling using unique clade-specific marker genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

TIPP: taxonomic identification and phylogenetic profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Twilight zone of protein sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Profile hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Pfam: the protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

HMMER web server: interactive sequence similarity searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Profile hidden Markov models for the detection of viruses within metagenomic sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

The HHpred interactive server for protein homology detection and structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Unexpected features of the dark proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Detecting distant homologs using phylogenetic tree-based HMMs.

21 January 2018

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https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

A probabilistic treatment of phylogeny and sequence alignment.

21 January 2018

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https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification

21 January 2018

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Conservation of the TRAPPII-specific subunits of a Ypt/Rab exchanger complex

21 January 2018

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https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Performance of an iterated T-HMM for homology detection

21 January 2018

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https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

Ultra-large alignments using phylogeny-aware profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

FastTree 2--approximately maximum-likelihood trees for large alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-3097-0

UniProt: a hub for protein information

21 January 2018

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Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB

21 January 2018

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Metagenomic species profiling using universal phylogenetic marker genes

21 January 2018

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SEPP: SATé-enabled phylogenetic placement

21 January 2018

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PubMed Central

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5123343

A new generation of homology search tools based on probabilistic inference

26 November 2018

1 reference

PubMed Central

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5123343

FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function

26 November 2018

1 reference

PubMed Central

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5123343

10.1186/S12864-016-3097-0

26 November 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

21 June 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-016-3097-0

PMC publication ID

5123343

0 references

1 reference