(Q30404690)

21 June 2017

title

Structure-based prediction of methyl chemical shifts in proteins (English)

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protein structure prediction

21 June 2017

main subject

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Aleksandr B Sahakyan

1

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Wim F. Vranken

object named as

Wim F Vranken

series ordinal

2

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Michele Vendruscolo

series ordinal

4

object named as

Michele Vendruscolo

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21 June 2017

Andrea Cavalli

3

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21 June 2017

publication date

12 July 2011

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Journal of Biomolecular NMR

21 June 2017

published in

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21 June 2017

volume

50

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21 June 2017

issue

4

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21 June 2017

page(s)

331-346

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Protein side-chain dynamics as observed by solution- and solid-state NMR spectroscopy: a similarity revealed

21 June 2017

cites work

1 reference

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21 January 2018

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Protein structure determination from NMR chemical shifts

21 January 2018

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Simultaneous prediction of protein folding and docking at high resolution

21 January 2018

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Time averaging of NMR chemical shifts in the MLF peptide in the solid state

21 January 2018

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A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

21 January 2018

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Accessing ns-micros side chain dynamics in ubiquitin with methyl RDCs

21 January 2018

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Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR

21 January 2018

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New developments in isotope labeling strategies for protein solution NMR spectroscopy

21 January 2018

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Determination of Leu side-chain conformations in excited protein states by NMR relaxation dispersion.

21 January 2018

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Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example

21 January 2018

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Defining conformational ensembles of intrinsically disordered and partially folded proteins directly from chemical shifts.

21 January 2018

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Optimal isotope labelling for NMR protein structure determinations.

21 January 2018

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Fast and accurate predictions of protein NMR chemical shifts from interatomic distances.

21 January 2018

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A Transient and Low-Populated Protein-Folding Intermediate at Atomic Resolution

21 January 2018

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

21 January 2018

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Dependence of amino acid side chain 13C shifts on dihedral angle: application to conformational analysis

21 January 2018

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PROSHIFT: Protein chemical shift prediction using artificial neural networks

21 January 2018

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Structure determination of protein-protein complexes using NMR chemical shifts: case of an endonuclease colicin-immunity protein complex

21 January 2018

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Leucine side-chain conformation and dynamics in proteins from 13C NMR chemical shifts.

21 January 2018

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Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

21 January 2018

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Chemical shifts and three-dimensional protein structures

21 January 2018

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Comprehensive and cost-effective NMR spectroscopy of methyl groups in large proteins.

21 January 2018

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NMR structure determination for larger proteins using backbone-only data

21 January 2018

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Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data

21 January 2018

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The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins

21 January 2018

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Determination of protein structures in the solid state from NMR chemical shifts

21 January 2018

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Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins

21 January 2018

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Methyl groups as probes of supra-molecular structure, dynamics and function

21 January 2018

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Consistent blind protein structure generation from NMR chemical shift data

21 January 2018

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Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology

21 January 2018

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De novo protein structure generation from incomplete chemical shift assignments.

21 January 2018

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4D 1H-13C NMR spectroscopy for assignments of alanine methyls in large and complex protein structures

21 January 2018

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Experimental approaches for NMR studies of side-chain dynamics in high-molecular-weight proteins

21 January 2018

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Probing side-chain dynamics in high molecular weight proteins by deuterium NMR spin relaxation: an application to an 82-kDa enzyme

21 January 2018

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Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

21 January 2018

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21 January 2018

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Structure of ubiquitin refined at 1.8 A resolution

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10858-011-9524-2

Assessing the accuracy of protein structures by quantum mechanical computations of 13C(alpha) chemical shifts

21 January 2018

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Relationship between chemical shift value and accessible surface area for all amino acid atoms.

21 January 2018

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The CCPN data model for NMR spectroscopy: development of a software pipeline

21 January 2018

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PISCES: a protein sequence culling server

21 January 2018

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Interpreting protein chemical shift data

21 January 2018

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Automated 1H and 13C chemical shift prediction using the BioMagResBank

21 January 2018

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Automated prediction of 15N, 13Calpha, 13Cbeta and 13C' chemical shifts in proteins using a density functional database

21 January 2018

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Automated assignment in selectively methyl-labeled proteins.

21 January 2018

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Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase

21 January 2018

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Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins

21 January 2018

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Probing Side-Chain Dynamics of a Ribosome-Bound Nascent Chain Using Methyl NMR Spectroscopy

21 January 2018

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Quantitative dynamics and binding studies of the 20S proteasome by NMR

21 January 2018

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Improved side-chain torsion potentials for the Amber ff99SB protein force field

21 January 2018

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12 December 2020

4D prediction of protein (1)H chemical shifts

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12 December 2020

Validation of archived chemical shifts through atomic coordinates

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12 December 2020

13CHD2 methyl group probes of millisecond time scale exchange in proteins by 1H relaxation dispersion: an application to proteasome gating residue dynamics

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12 December 2020

Calibration of ring-current effects in proteins and nucleic acids

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12 December 2020

10.1007/S10858-011-9524-2

Identifiers

DOI

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21 June 2017

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