(Q30408410)

English

Quantitative assessment of protein structural models by comparison of H/D exchange MS data with exchange behavior accurately predicted by DXCOREX.

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

Quantitative assessment of protein structural models by comparison of H/D exchange MS data with exchange behavior accurately predicted by DXCOREX (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

Dionysios Pantazatos

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

author name string

Tong Liu

1

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14 January 2020

Sheng Li

3

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14 January 2020

Yoshitomo Hamuro

4

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14 January 2020

Vincent J Hilser

5

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14 January 2020

Virgil L Woods

6

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14 January 2020

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20 October 2011

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14 January 2020

Journal of the American Society for Mass Spectrometry

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14 January 2020

23

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14 January 2020

1

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14 January 2020

43-56

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

Conformational changes in the G protein Gs induced by the β2 adrenergic receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structural flexibility of the G alpha s alpha-helical domain in the beta2-adrenoceptor Gs complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Predicting protein structures with a multiplayer online game

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Online, high-pressure digestion system for protein characterization by hydrogen/deuterium exchange and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

A conserved MutS homolog connector domain interface interacts with MutL homologs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structural insights into glucan phosphatase dynamics using amide hydrogen-deuterium exchange mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Peptide conformer acidity analysis of protein flexibility monitored by hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structural dynamics of soluble chloride intracellular channel protein CLIC1 examined by amide hydrogen-deuterium exchange mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

A common property of amyotrophic lateral sclerosis-associated variants: destabilization of the copper/zinc superoxide dismutase electrostatic loop

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein hydrogen exchange measured at single-residue resolution by electron transfer dissociation mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Localizing the membrane binding region of Group VIA Ca2+-independent phospholipase A2 using peptide amide hydrogen/deuterium exchange mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein conformations can be probed in top-down HDX MS experiments utilizing electron transfer dissociation of protein ions without hydrogen scrambling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Isofagomine induced stabilization of glucocerebrosidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein folding: independent unrelated pathways or predetermined pathway with optional errors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Prediction of the tissue-specificity of selective estrogen receptor modulators by using a single biochemical method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein folding and misfolding: mechanism and principles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Hydrogen/deuterium exchange-mass spectrometry: a powerful tool for probing protein structure, dynamics and interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structure of acid beta-glucosidase with pharmacological chaperone provides insight into Gaucher disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Regions of IkappaBalpha that are critical for its inhibition of NF-kappaB.DNA interaction fold upon binding to NF-kappaB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Mapping protein dynamics in catalytic intermediates of the redox-driven proton pump cytochrome c oxidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Solvent accessibility of protein surfaces by amide H/2H exchange MALDI-TOF mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Revealing the nature of the native state ensemble through cold denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Hydrogen exchange and mass spectrometry: A historical perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Hydrogen/deuterium-exchange (H/D-Ex) of PPARgamma LBD in the presence of various modulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Crystal structure of the actin-binding domain of alpha-actinin 1: evaluating two competing actin-binding models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

A statistical thermodynamic model of the protein ensemble

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Direct access to the cooperative substructure of proteins and the protein ensemble via cold denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

ALS mutants of human superoxide dismutase form fibrous aggregates via framework destabilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Electrostatic properties of the structure of the docking and dimerization domain of protein kinase A IIalpha

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structure of a phage display-derived variant of human growth hormone complexed to two copies of the extracellular domain of its receptor: evidence for strong structural coupling between receptor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Modeling the native state ensemble.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein folding intermediates and pathways studied by hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structure of an IkappaBalpha/NF-kappaB complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Ligand binding and co-activator assembly of the peroxisome proliferator-activated receptor-gamma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

The structure of mitogen-activated protein kinase p38 at 2.1-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Energetics of hydrogen bonding in proteins: a model compound study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Primary structure effects on peptide group hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

The crystal structure of affinity-matured human growth hormone at 2 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Thermodynamic characterization of an equilibrium folding intermediate of staphylococcal nuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Protein folding intermediates: native-state hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Primary structure effects on peptide group hydrogen exchange.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Temperature dependence of the hydrophobic interaction in protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

WHAT IF: a molecular modeling and drug design program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

Areas, volumes, packing and protein structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3889642

20 June 2018

The origin of pH-dependent changes in m-values for the denaturant-induced unfolding of proteins

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Energetic profiling of protein folds.

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Distinct interaction modes of an AKAP bound to two regulatory subunit isoforms of protein kinase A revealed by amide hydrogen/deuterium exchange

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

The role of protein dynamics in increasing binding affinity for an engineered protein-protein interaction established by H/D exchange mass spectrometry.

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Crystal structure of the E230Q mutant of cAMP-dependent protein kinase reveals an unexpected apoenzyme conformation and an extended N-terminal A helix

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Allosteric network of cAMP-dependent protein kinase revealed by mutation of Tyr204 in the P+1 loop

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Phosphoinositide binding regulates alpha-actinin CH2 domain structure: analysis by hydrogen/deuterium exchange mass spectrometry

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange.

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Structural elements involved in proton translocation by cytochrome c oxidase as revealed by backbone amide hydrogen-deuterium exchange of the E286H mutant

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Prediction of Local Structural Stabilities of Proteins from Their Amino Acid Sequences

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0267-9

21 January 2018

Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin

1 reference

https://pubmed.ncbi.nlm.nih.gov/22012689

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The heat capacity of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/22012689

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The magnitude of the backbone conformational entropy change in protein folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/22012689

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural Interpretation of Hydrogen Exchange Protection Factors in Proteins: Characterization of the Native State Fluctuations of CI2

1 reference

https://pubmed.ncbi.nlm.nih.gov/22012689

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Location of substrate binding sites within the integral membrane protein microsomal glutathione transferase-1

1 reference

https://pubmed.ncbi.nlm.nih.gov/22012689

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S13361-011-0267-9

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22012689%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

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