(Q30409630)

8 November 2017

The dual role of fragments in fragment-assembly methods for de novo protein structure prediction (English)

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protein structure prediction

8 November 2017

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author

Simon C Lovell

5

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8 November 2017

David Baker

4

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author name string

Julia Handl

1

1 reference

8 November 2017

Joshua Knowles

2

1 reference

8 November 2017

Robert Vernon

3

1 reference

8 November 2017

language of work or name

English

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publication date

17 November 2011

1 reference

8 November 2017

1 reference

8 November 2017

80

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8 November 2017

2

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8 November 2017

490-504

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Generalized fragment picking in Rosetta: design, protocols and applications

8 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Four small puzzles that Rosetta doesn't solve

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Assessment of CASP8 structure predictions for template free targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Structure prediction for CASP8 with all-atom refinement using Rosetta.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Generalized ensemble methods for de novo structure prediction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Simulated tempering yields insight into the low-resolution Rosetta scoring functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Guiding conformation space search with an all-atom energy potential.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Protein-structure prediction by recombination of fragments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

SimFold energy function for de novo protein structure prediction: consensus with Rosetta.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Protein structure prediction using Rosetta

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Prediction of local structure in proteins using a library of sequence-structure motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Local sequence-structure correlations in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3849216

Predicting novel protein folds by using FRAGFOLD.

20 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23215

Critical assessment of methods of protein structure prediction - Round VIII.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23215

Variable neighborhood search

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23215

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23215

An Effective Heuristic Algorithm for the Traveling-Salesman Problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23215

21 January 2018

Identifiers

DOI

10.1002/PROT.23215

1 reference

8 November 2017

1 reference

8 November 2017

PubMed publication ID

22095594

1 reference