(Q30411067)

20 September 2017

Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites (English)

1 reference

20 September 2017

4

Roland L Dunbrack

1 reference

20 September 2017

Donald S Berkholz

1

1 reference

20 September 2017

Camden M Driggers

series ordinal

2

1 reference

20 September 2017

Maxim V Shapovalov

series ordinal

3

1 reference

20 September 2017

P Andrew Karplus

series ordinal

5

1 reference

20 September 2017

language of work or name

English

0 references

publication date

23 December 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

20 September 2017

1 reference

20 September 2017

109

1 reference

20 September 2017

2

1 reference

20 September 2017

449-453

1 reference

A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Functional versus folding landscapes: the same yet different

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Conformation dependence of backbone geometry in proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Conserved main-chain peptide distortions: A proposed role for Ile203 in catalysis by dihydrodipicolinate synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

An introduction to stereochemical restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Configurations of Polypeptide Chains With Favored Orientations Around Single Bonds: Two New Pleated Sheets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

PISCES: recent improvements to a PDB sequence culling server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Correlation between omega and psi dihedral angles in protein structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Crystal structure of putidaredoxin reductase from Pseudomonas putida, the final structural component of the cytochrome P450cam monooxygenase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

The PDZ2 domain of syntenin at ultra-high resolution: bridging the gap between macromolecular and small molecule crystallography

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Structure of Plasmodium falciparum triose-phosphate isomerase-2-phosphoglycerate complex at 1.1-A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Structural basis for ligand binding and processivity in cellobiohydrolase Cel6A from Humicola insolens

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Crystal structure of triosephosphate isomerase complexed with 2-phosphoglycolate at 0.83-A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2-A resolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Pyramidalization of backbone carbonyl carbon atoms in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Structural insights into the mechanism of intramolecular proteolysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Lowering the entropic barrier for binding conformationally flexible inhibitors to enzymes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

The 1.25 A resolution refinement of the cholera toxin B-pentamer: evidence of peptide backbone strain at the receptor-binding site

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Snapshots along an enzymatic reaction coordinate: analysis of a retaining beta-glycoside hydrolase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Atomic resolution (1.0 A) crystal structure of Fusarium solani cutinase: stereochemical analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Deviations from planarity of the peptide bond in peptides and proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

An atomic view of the L-tryptophan binding site of trp repressor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Experimentally observed conformation-dependent geometry and hidden strain in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Foldons, protein structural modules, and exons

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258596

Linus Pauling and the planar peptide bond.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107115108

Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107115108

WSsas: a web service for the annotation of functional residues through structural homologues

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107115108

Veni, vidi, vici — atomic resolution unravelling the mysteries of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1107115108

Ribonuclease from Streptomyces aureofaciens at atomic resolution

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22198840

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Fundamental dimensions of polypeptide chains

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22198840

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of the steric strain in the polypeptide backbone of protein molecules

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22198840

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1107115108

1 reference

20 September 2017

0 references

1 reference

20 September 2017

1 reference