(Q30411400)

2 November 2017

How noise in force fields can affect the structural refinement of protein models? (English)

1 reference

2 November 2017

3

Robert L Jernigan

1 reference

2 November 2017

4

Andrzej Kloczkowski

1 reference

2 November 2017

Andrzej Kolinski

2

0 references

Pawel Gniewek

series ordinal

1

object named as

Pawel Gniewek

1 reference

2 November 2017

PMC publication ID

3326201

language of work or name

English

0 references

publication date

16 December 2011

1 reference

2 November 2017

1 reference

2 November 2017

80

1 reference

2 November 2017

2

1 reference

2 November 2017

335-341

1 reference

I-TASSER: a unified platform for automated protein structure and function prediction

2 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Assessment of the protein-structure refinement category in CASP8

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

FINDSITE: a threading-based approach to ligand homology modeling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

FINDSITE: a combined evolution/structure-based approach to protein function prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

I-TASSER server for protein 3D structure prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Prediction of the structure of symmetrical protein assemblies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Assessment of CASP7 predictions for template-based modeling targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Structures in systems biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Protein modeling and structure prediction with a reduced representation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Critical assessment of methods of protein structure prediction (CASP)-round V.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Modeling of loops in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Twilight zone of protein sequence alignments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

Spin glasses and the statistical mechanics of protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

The Energy Landscapes and Motions of Proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3326201

A solution for the best rotation to relate two sets of vectors

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.23240

A correlation-based method for the enhancement of scoring functions on funnel-shaped energy landscapes.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.23240

21 January 2018

Identifiers

DOI

10.1002/PROT.23240

1 reference

2 November 2017

1 reference

PMC publication ID

3326201

2 November 2017

PubMed publication ID

22223184

1 reference

PMC publication ID

3326201