(Q30412925)

15 August 2017

Blind testing of routine, fully automated determination of protein structures from NMR data (English)

1 reference

15 August 2017

1 reference

10

0 references

Aleksandras Gutmanas

11

0 references

Torsten Herrmann

14

0 references

Michael Nilges

25

0 references

Wim F. Vranken

Wim F Vranken

32

0 references

Antonio Rosato

Antonio Rosato

1

0 references

Harald Schwalbe

Harald Schwalbe

28

0 references

Cheryl Arrowsmith

Cheryl Arrowsmith

3

0 references

David Baker

David Baker

5

0 references

Andrea Giachetti

Andrea Giachetti

9

0 references

Gaetano T. Montelione

24

Gaetano T Montelione

1 reference

15 August 2017

Geerten W Vuister

34

0 references

Michele Vendruscolo

30

Michele Vendruscolo

1 reference

15 August 2017

Peter Güntert

12

0 references

Paolo Rossi

26

Paolo Rossi

1 reference

15 August 2017

James M Aramini

2

1 reference

15 August 2017

Anurag Bagaria

4

1 reference

15 August 2017

Andrea Cavalli

6

1 reference

15 August 2017

Jurgen F Doreleijers

7

1 reference

15 August 2017

Alexander Eletsky

8

1 reference

15 August 2017

Yunfen He

13

1 reference

15 August 2017

Yuanpeng J Huang

15

1 reference

15 August 2017

Victor Jaravine

16

1 reference

15 August 2017

Hendrik R A Jonker

17

1 reference

15 August 2017

Michael A Kennedy

18

1 reference

15 August 2017

Oliver F Lange

19

1 reference

15 August 2017

Gaohua Liu

20

1 reference

15 August 2017

Thérèse E Malliavin

21

1 reference

15 August 2017

Rajeswari Mani

22

1 reference

15 August 2017

Binchen Mao

23

1 reference

15 August 2017

Gijs van der Schot

27

1 reference

15 August 2017

Thomas A Szyperski

29

1 reference

15 August 2017

Robert Vernon

31

1 reference

15 August 2017

Sjoerd de Vries

33

1 reference

15 August 2017

Bin Wu

35

1 reference

15 August 2017

Yunhuang Yang

36

1 reference

15 August 2017

Alexandre M J J Bonvin

37

1 reference

15 August 2017

1 February 2012

1 reference

15 August 2017

1 reference

15 August 2017

20

1 reference

15 August 2017

2

1 reference

15 August 2017

227-236

1 reference

Advances in automated NMR protein structure determination

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

The eNMR platform for structural biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

NMR structure determination for larger proteins using backbone-only data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Accurate automated protein NMR structure determination using unassigned NOESY data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

CASD-NMR: critical assessment of automated structure determination by NMR

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Flipping of alkylated DNA damage bridges base and nucleotide excision repair

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Structural biology by NMR: structure, dynamics, and interactions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Consistent blind protein structure generation from NMR chemical shift data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

The war of tools: how can NMR spectroscopists detect errors in their structures?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Version 1.2 of the Crystallography and NMR system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Protein structure determination from NMR chemical shifts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Evaluating protein structures determined by structural genomics consortia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

ARIA2: automated NOE assignment and data integration in NMR structure calculation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Automated protein structure determination from NMR spectra.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Traditional biomolecular structure determination by NMR spectroscopy allows for major errors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Weighting of experimental evidence in macromolecular structure determination

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

A topology-constrained distance network algorithm for protein structure determination from NOESY data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Modeling errors in NOE data with a log-normal distribution improves the quality of NMR structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Scoring function for automated assessment of protein structure template quality

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Force fields for protein simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

LGA: A method for finding 3D similarities in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Refinement of protein structures in explicit solvent

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Structure calculation of biological macromolecules from NMR data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

VERIFY3D: assessment of protein models with three-dimensional profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Torsion angle dynamics for NMR structure calculation with the new program DYANA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Ambiguous distance data in the calculation of NMR structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Floating stereospecific assignment revisited: application to an 18 kDa protein and comparison with J-coupling data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

The new program OPAL for molecular dynamics simulations and energy refinements of biological macromolecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Recognition of errors in three-dimensional structures of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Accurate NMR structures through minimization of an extended hybrid energy.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Domain definition and target classification for CASP7

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Quantitative evaluation of experimental NMR restraints.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Determination of protein backbone structure using only residual dipolar couplings.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3609704

Automated structure determination from NMR spectra

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22325772

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single-Step Determination of Protein Substructures Using Dipolar Couplings: Aid to Structural Genomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22325772

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.STR.2012.01.002

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

22325772

1 reference