(Q30418498)

21 June 2017

title

Protein structure prediction: challenging targets for CASP10. (English)

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protein structure prediction

21 June 2017

main subject

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author name string

Ashish Runthala

series ordinal

1

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21 June 2017

publication date

26 June 2012

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Journal of Biomolecular Structure and Dynamics

21 June 2017

published in

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21 June 2017

volume

30

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21 June 2017

issue

5

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21 June 2017

page(s)

607-615

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2017

cites work

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https://api.crossref.org/works/10.1080%2F07391102.2012.687526

21 January 2018

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Sequence context-specific profiles for homology searching

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Ab initio protein structure prediction: progress and prospects.

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A graph-theory algorithm for rapid protein side-chain prediction

21 January 2018

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Accuracy of structure-derived properties in simple comparative models of protein structures

21 January 2018

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Can molecular dynamics simulations provide high-resolution refinement of protein structure?

21 January 2018

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DOMAC: an accurate, hybrid protein domain prediction server.

21 January 2018

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The evaluation of protein structure prediction results.

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Sequence comparison and protein structure prediction.

21 January 2018

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Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

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Comparative modeling for protein structure prediction

21 January 2018

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Homologous over-extension: a challenge for iterative similarity searches

21 January 2018

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Ab initio protein structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

A new method for building protein conformations from sequence alignments with homologues of known structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Assessment of CASP7 structure predictions for template free targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

High accuracy template based modeling by global optimization

21 January 2018

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The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models

21 January 2018

1 reference

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Protein structure prediction and model quality assessment

21 January 2018

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Accurate modeling of protein conformation by automatic segment matching

21 January 2018

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Progress and challenges in high-resolution refinement of protein structure models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.

21 January 2018

1 reference

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Critical assessment of methods of protein structure prediction-Round VII

21 January 2018

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21 January 2018

From fold to function.

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21 January 2018

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Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation.

21 January 2018

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High-resolution structure prediction and the crystallographic phase problem

21 January 2018

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Assessment of CASP7 predictions in the high accuracy template-based modeling category

21 January 2018

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Automatic prediction of protein function

21 January 2018

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Effects of amino acid composition, finite size of proteins, and sparse statistics on distance-dependent statistical pair potentials

21 January 2018

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Benchmarking template selection and model quality assessment for high-resolution comparative modeling.

21 January 2018

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Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

21 January 2018

1 reference

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Assessment of homology-based predictions in CASP5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Assessment of predictions submitted for the CASP7 domain prediction category.

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Assessment of predictions submitted for the CASP6 comparative modeling category

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

A 3D building blocks approach to analyzing and predicting structure of proteins

21 January 2018

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PISCES: a protein sequence culling server

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.2012.687526

The DISOPRED server for the prediction of protein disorder

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.2012.687526

How significant is a protein structure similarity with TM-score = 0.5?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Template-based modeling and free modeling by I-TASSER in CASP7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Progress and challenges in protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

TASSER: an automated method for the prediction of protein tertiary structures in CASP6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

SPICKER: a clustering approach to identify near-native protein folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

The protein structure prediction problem could be solved using the current PDB library

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

Ab initio protein structure prediction using chunk-TASSER

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2012.687526

10.1080/07391102.2012.687526

21 January 2018

Identifiers

DOI

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21 June 2017

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