(Q30423600)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23151606%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

Protein co-evolution: how do we combine bioinformatics and experimental approaches? (English)

1 reference

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17 February 2020

0 references

0 references

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3

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17 February 2020

author name string

Inga Sandler

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23151606%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Mehtap Abu-Qarn

series ordinal

2

1 reference

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17 February 2020

publication date

15 November 2012

1 reference

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17 February 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23151606%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

volume

9

1 reference

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17 February 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23151606%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

page(s)

175-181

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23151606%20AND%20SRC:MED&resulttype=core&format=json

The protein-protein interaction map of Helicobacter pylori

17 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

A protein interaction map of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

A map of the interactome network of the metazoan C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Conserved patterns of protein interaction in multiple species

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

An integrated view of molecular coevolution in protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Protein co-evolution, co-adaptation and interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Tight coevolution of proliferating cell nuclear antigen (PCNA)-partner interaction networks in fungi leads to interspecies network incompatibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Co-evolution of proteins with their interaction partners

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Structure, function, and evolution of transient and obligate protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Phylogenetic methodology for detecting protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Detecting coevolution in and among protein domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

The effect of sequence evolution on protein structural divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Amino acid coevolution induces an evolutionary Stokes shift.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

The transition of human estrogen sulfotransferase from generalist to specialist using directed enzyme evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Protein stability promotes evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Stability effects of mutations and protein evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Directed evolution of mammalian paraoxonases PON1 and PON3 for bacterial expression and catalytic specialization

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

A method to predict functional residues in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Analysis and prediction of functional sub-types from protein sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Automated prediction of protein function and detection of functional sites from structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Protein interactions and ligand binding: from protein subfamilies to functional specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

The Ras protein superfamily: evolutionary tree and role of conserved amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Identification of conserved amino acid residues in rat liver carnitine palmitoyltransferase I critical for malonyl-CoA inhibition. Mutation of methionine 593 abolishes malonyl-CoA inhibition

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

An evolutionary trace method defines binding surfaces common to protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Evolution: a guide to perturb protein function and networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Evolutionarily conserved pathways of energetic connectivity in protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Role of the biomolecular energy gap in protein design, structure, and evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Identification of direct residue contacts in protein-protein interaction by message passing

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Rapid coevolution of the nematode sex-determining genes fem-3 and tra-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Coevolution of head, neck, and tail domains of myosin heavy chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Chimeras of Dictyostelium myosin II head and neck domains with Acanthamoeba or chicken smooth muscle myosin II tail domain have greatly increased and unregulated actin-dependent MgATPase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Molecular coevolution within a Drosophila clock gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Coevolution of cyclin Pcl5 and its substrate Gcn4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Translational regulation of GCN4 and the general amino acid control of yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Divergence of transcription factor binding sites across related yeast species

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Extensive DNA-binding specificity divergence of a conserved transcription regulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Coevolution within a transcriptional network by compensatory trans and cis mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

Conservation and evolution of cis-regulatory systems in ascomycete fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

The Relationship Between Sequence and Interaction Divergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25317H

21 January 2018

Identifiers

DOI

10.1039/C2MB25317H

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23151606%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference