(Q30444920)

20 August 2017

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing (English)

1 reference

20 August 2017

1 reference

0 references

18

1 reference

PubMed publication ID

21 June 2017

Michael C Chao

5

0 references

Tyson A Clark

object named as

Tyson A Clark

12

0 references

David I Friedman

object named as

David I Friedman

3

0 references

Andrew Chess

17

object named as

Andrew Chess

1 reference

20 August 2017

11

Gintaras Deikus

1 reference

20 August 2017

23

Eric E Schadt

1 reference

20 August 2017

22

Matthew K Waldor

1 reference

20 August 2017

Gang Fang

1

1 reference

20 August 2017

Diana Munera

2

1 reference

20 August 2017

Anjali Mandlik

4

1 reference

20 August 2017

Onureena Banerjee

6

1 reference

20 August 2017

Zhixing Feng

7

1 reference

20 August 2017

Bojan Losic

8

1 reference

20 August 2017

Milind C Mahajan

9

1 reference

20 August 2017

Omar J Jabado

10

1 reference

20 August 2017

Khai Luong

13

1 reference

20 August 2017

Iain A Murray

14

1 reference

20 August 2017

Brigid M Davis

15

1 reference

20 August 2017

Alona Keren-Paz

16

1 reference

20 August 2017

Jonas Korlach

19

1 reference

20 August 2017

Steve W Turner

20

1 reference

20 August 2017

Vipin Kumar

21

1 reference

20 August 2017

8 November 2012

1 reference

20 August 2017

1 reference

20 August 2017

30

1 reference

20 August 2017

12

1 reference

20 August 2017

1232-1239

1 reference

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Novel non-specific DNA adenine methyltransferases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

The origin of the Haitian cholera outbreak strain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

A window into third-generation sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

A flexible and efficient template format for circular consensus sequencing and SNP detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Direct detection of DNA methylation during single-molecule, real-time sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

A scaling normalization method for differential expression analysis of RNA-seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Parental origin of sequence variants associated with complex diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

MEME SUITE: tools for motif discovery and searching

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Phasevarions mediate random switching of gene expression in pathogenic Neisseria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Accurate whole human genome sequencing using reversible terminator chemistry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

A DNA methylation ratchet governs progression through a bacterial cell cycle

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

YhdJ, a nonessential CcrM-like DNA methyltransferase of Escherichia coli and Salmonella enterica.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Environmental epigenomics and disease susceptibility

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Epigenetic gene regulation in the bacterial world

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

N6-methyl-adenine: an epigenetic signal for DNA-protein interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Epigenetic transgenerational actions of endocrine disruptors and male fertility

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Dam methylation: coordinating cellular processes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Pathogenic Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

A new pyrimidine base from bacteriophage nucleic acids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Roles of DNA adenine methylation in regulating bacterial gene expression and virulence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Bacterial DNA methylation: a cell cycle regulator?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

An essential role for DNA adenine methylation in bacterial virulence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Epigenetic phase variation of the pap operon in Escherichia coli.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Flagellin A is essential for the virulence of Vibrio anguillarum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

A cell cycle-regulated bacterial DNA methyltransferase is essential for viability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

The DNA (cytosine-5) methyltransferases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Modified bases in bacteriophage DNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Purification and characterization of the unusual deoxynucleoside, alpha-N-(9-beta-D-2'-deoxyribofuranosylpurin-6-yl)glycinamide, specified by the phage Mu modification function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

IS10 transposition is regulated by DNA adenine methylation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Timing and targeting: the biological functions of Dam methylation in E. coli.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3879109

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.2432

Regulation of traJ transcription in the Salmonella virulence plasmid by strand-specific DNA adenine hemimethylation.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.2432

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23138224

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Temperate coliphage HK022. Clear plaque mutants and preliminary vegetative map

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23138224

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recombination between related temperate bacteriophages and the genetic control of immunity and prophage localization

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23138224

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.2432

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

23138224

1 reference