(Q30450703)

21 June 2017

title

Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing (English)

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21 June 2017

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1

Daniel B Sloan

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21 June 2017

Douglas R Taylor

2

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21 June 2017

publication date

28 April 2010

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Journal of Molecular Evolution

21 June 2017

published in

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21 June 2017

volume

70

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21 June 2017

issue

5

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21 June 2017

page(s)

479-491

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Codon catalog usage is a genome strategy modulated for gene expressivity

21 June 2017

cites work

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Crossref

https://api.crossref.org/works/10.1007%2FS00239-010-9346-Y

Pseudogenes as a paradigm of neutral evolution

21 January 2018

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12 December 2020

Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes

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12 December 2020

Evolution of synonymous codon usage in metazoans

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12 December 2020

The evolution of chloroplast RNA editing

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12 December 2020

The gain of three mitochondrial introns identifies liverworts as the earliest land plants

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12 December 2020

Different patterns in the recognition of editing sites in plant mitochondria

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12 December 2020

Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites

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12 December 2020

Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms

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12 December 2020

Adaptive protein evolution at the Adh locus in Drosophila

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12 December 2020

Two RNA editing sites with cis-acting elements of moderate sequence identity are recognized by an identical site-recognition protein in tobacco chloroplasts

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12 December 2020

Coding-sequence determinants of gene expression in Escherichia coli

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12 December 2020

Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: implication of potential sequencing errors caused by large-unit repeats.

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12 December 2020

A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts

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12 December 2020

The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides

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12 December 2020

Evidence for a site-specific cytidine deamination reaction involved in C to U RNA editing of plant mitochondria

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12 December 2020

Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae

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12 December 2020

Sequence elements critical for efficient RNA editing of a tobacco chloroplast transcript in vivo and in vitro

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12 December 2020

Identification and structural characterization of nucleus-encoded transfer RNAs imported into wheat mitochondria

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12 December 2020

Molecular evolution and phylogenetic utility of the petD group II intron: a case study in basal angiosperms

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12 December 2020

Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants

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12 December 2020

High intrinsic rate of DNA loss in Drosophila

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12 December 2020

Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts

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12 December 2020

Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage

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12 December 2020

Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence

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12 December 2020

REDIdb: the RNA editing database.

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12 December 2020

PAML 4: phylogenetic analysis by maximum likelihood

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12 December 2020

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

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12 December 2020

Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase

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12 December 2020

Evolutionary rate variation at multiple levels of biological organization in plant mitochondrial DNA

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12 December 2020

Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes

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12 December 2020

Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris

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12 December 2020

Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

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12 December 2020

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal

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12 December 2020

High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

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12 December 2020

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

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12 December 2020

A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

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12 December 2020

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

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12 December 2020

Codon--anticodon pairing: the wobble hypothesis

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12 December 2020

Analysis of synonymous codon usage patterns in different plant mitochondrial genomes

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12 December 2020

The Bioperl toolkit: Perl modules for the life sciences

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Adaptive evolution of non-coding DNA in Drosophila

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12 December 2020

Comparative and functional anatomy of group II catalytic introns—a review

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12 December 2020

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

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12 December 2020

CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.

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12 December 2020

The 'effective number of codons' used in a gene

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12 December 2020

The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias

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12 December 2020

Heat stress enhances the accumulation of polyadenylated mitochondrial transcripts in Arabidopsis thaliana

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12 December 2020

Complex cis-elements determine an RNA editing site in pea mitochondria

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12 December 2020

A "silent" polymorphism in the MDR1 gene changes substrate specificity

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12 December 2020

Hearing silence: non-neutral evolution at synonymous sites in mammals

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12 December 2020

The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA.

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12 December 2020

Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

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12 December 2020

Angiosperm mitochondrial genomes and mutations.

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12 December 2020

The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites

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12 December 2020

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

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12 December 2020

A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana

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12 December 2020

cis Recognition elements in plant mitochondrion RNA editing

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12 December 2020

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

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12 December 2020

Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts

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12 December 2020

Mutation pressure and the evolution of organelle genomic architecture

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12 December 2020

Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection

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12 December 2020

Analysis of factors shaping codon usage in the mitochondrion genome of Oryza sativa

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12 December 2020

A gene expression map of Arabidopsis thaliana development

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12 December 2020

Codon usage and tRNA content in unicellular and multicellular organisms

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12 December 2020

10.1007/S00239-010-9346-Y

Identifiers

DOI

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Dimensions Publication ID

21 June 2017

1029118157

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