(Q30485191)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles) (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

0 references

0 references

1 reference

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Richard D. Smith

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Mark Baker

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Henning Hermjakob

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Gil Omenn

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Richard Simpson

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

21

Robert L Moritz

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

33

David L Tabb

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

9

Eric W Deutsch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

Henry Daniel Ponce-Rodríguez

15 January 2020

36

object named as

Henry Rodriguez

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

5

Christoph H Borchers

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

17

Patrik Kolar

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

32

Stephen E Stein

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Christopher R Kinsinger

1

object named as

Christopher R Kinsinger

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

2

James Apffel

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

4

Xiaopeng Bian

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

7

Mi-Youn Brusniak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

10

Bruno Domon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

12

Rudolf Grimm

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

19

Hanno Langen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

23

Ron Orlando

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

30

Douglas Slotta

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

34

Danilo Tagle

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

author name string

Ralph Bradshaw

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Daniel W Chan

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Jeff Gorman

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

William Hancock

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

David Horn

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Christie Hunter

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Hans-Joachim Kraus

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Rune Linding

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Akhilesh Pandey

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Amir Rahbar

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Robert Rivers

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Sean L Seymour

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

John R Yates

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

publication date

8 December 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

Journal of Proteome Research

15 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

page(s)

1412-1419

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

15 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

mProphet: automated data processing and statistical validation for large-scale SRM experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

mzML--a community standard for mass spectrometry data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Evolution of clinical proteomics and its role in medicine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

ProteomeCommons.org collaborative annotation and project management resource integrated with the Tranche repository

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The Proteomics Identifications database: 2010 update

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Statistical calibration of the SEQUEST XCorr function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

mzML: a single, unifying data format for mass spectrometer output

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Colander: a probability-based support vector machine algorithm for automatic screening for CID spectra of phosphopeptides prior to database search.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Proteomics FASTA archive and reference resource

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The minimum information about a proteomics experiment (MIAPE)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Validated MALDI-TOF/TOF mass spectra for protein standards

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Automatic validation of phosphopeptide identifications from tandem mass spectra

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Guidelines for the next 10 years of proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Open source system for analyzing, validating, and storing protein identification data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The Human Proteome Organization Plasma Proteome Project pilot phase: reference specimens, technology platform comparisons, and standardized data submissions and analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

A statistical model for identifying proteins by tandem mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The human proteome project: Current state and future direction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Implementing data standards: a report on the HUPOPSI workshop September 2009, Toronto, Canada

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Census for proteome quantification

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Reporting protein identification data: the next generation of guidelines.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3272102

Revised draft guidelines for proteomic data publication

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22053864

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 study: relative protein quantitation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22053864

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR201071T

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22053864%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference