(Q30486531)

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Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold (English)

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

22 June 2017

Jyoti Choudhary

object named as

Jyoti Choudhary

4

0 references

1

object named as

Markus Brosch

1 reference

Europe PubMed Central

15 November 2017

PMC publication ID

author name string

Sajani Swamy

2

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

publication date

23 January 2008

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

Molecular & Cellular Proteomics

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

7

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

5

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

962-970

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

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On the proper use of mass accuracy in proteomics.

1 reference

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1 reference

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Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

1 reference

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A mammalian organelle map by protein correlation profiling

1 reference

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Improved classification of mass spectrometry database search results using newer machine learning approaches

1 reference

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20 June 2018

Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation

1 reference

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New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques

1 reference

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The Orbitrap: a new mass spectrometer

1 reference

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Open mass spectrometry search algorithm

1 reference

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Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications

1 reference

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Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics

1 reference

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TANDEM: matching proteins with tandem mass spectra

1 reference

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20 June 2018

Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS.

1 reference

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20 June 2018

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

1 reference

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20 June 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656932

20 June 2018

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

1 reference

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20 June 2018

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

1 reference

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Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

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Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level.

1 reference

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Proposal for a common nomenclature for sequence ions in mass spectra of peptides

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20 June 2018

Contributions of mass spectrometry to peptide and protein structure

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Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry

1 reference

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20 June 2018

Optimization and use of peptide mass measurement accuracy in shotgun proteomics.

1 reference

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A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

1 reference

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Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation.

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Potential for false positive identifications from large databases through tandem mass spectrometry.

1 reference

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21 January 2018

Identifiers

10.1074/MCP.M700293-MCP200

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 November 2017

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