(Q30487947)

English

Statistical model to analyze quantitative proteomics data obtained by 18O/16O labeling and linear ion trap mass spectrometry: application to the study of vascular endothelial growth factor-induced angiogenesis in endothelial cells

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19181660%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Statistical model to analyze quantitative proteomics data obtained by 18O/16O labeling and linear ion trap mass spectrometry: application to the study of vascular endothelial growth factor-induced angiogenesis in endothelial cells (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19181660%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

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1 reference

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lithium-ion battery

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Inmaculada Jorge

1

1 reference

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20 January 2020

2

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20 January 2020

Juan Miguel Redondo

7

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20 January 2020

Jesús Vázquez

8

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20 January 2020

author name string

Pablo Martínez-Acedo

3

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20 January 2020

Estefanía Núñez

4

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20 January 2020

Horacio Serrano

5

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20 January 2020

Arántzazu Alfranca

6

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20 January 2020

publication date

29 January 2009

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20 January 2020

Molecular & Cellular Proteomics

1 reference

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20 January 2020

8

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20 January 2020

5

1 reference

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20 January 2020

1130-1149

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19181660%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

A quantitative analysis software tool for mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

iTRAQPak: an R based analysis and visualization package for 8-plex isobaric protein expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

What's driving false discovery rates?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Modes of inference for evaluating the confidence of peptide identifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Proteomic characterization of angiogenic endothelial cells stimulated with cancer cell-conditioned medium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Design and analysis issues in quantitative proteomics studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Capture and analysis of quantitative proteomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Precise protein quantification based on peptide quantification using iTRAQ.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Towards the uniform distribution of null P values on Affymetrix microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Improved method for differential expression proteomics using trypsin-catalyzed 18O labeling with a correction for labeling efficiency.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Minimizing back exchange in 18O/16O quantitative proteomics experiments by incorporation of immobilized trypsin into the initial digestion step

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Bevacizumab: an angiogenesis inhibitor for the treatment of solid malignancies

1 reference

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14 July 2018

Hsp90 as a target for drug development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Identification of a lipase-linked cell membrane receptor for pigment epithelium-derived factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Empirical array quality weights in the analysis of microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Systematic characterization of phosphorylation sites in NFATc2 by linear ion trap mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Quantitative proteomics using 16O/18O labeling and linear ion trap mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

The angiogenic function of nucleolin is mediated by vascular endothelial growth factor and nonmuscle myosin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Microarray data analysis: from disarray to consolidation and consensus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Inhibition of tumor angiogenesis by a natural fragment of a tRNA synthetase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

VEGF treatment induces signaling pathways that regulate both actin polymerization and depolymerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Statistical model for large-scale peptide identification in databases from tandem mass spectra using SEQUEST.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Vascular endothelial growth factor- and thrombin-induced termination factor, Down syndrome critical region-1, attenuates endothelial cell proliferation and angiogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Comparison of fluorescent stains: relative photostability and differential staining of proteins in two-dimensional gels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Antiangiogenic properties of 17-(dimethylaminoethylamino)-17-demethoxygeldanamycin: an orally bioavailable heat shock protein 90 modulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Relationship of two human tRNA synthetases used in cell signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

A correlation algorithm for the automated quantitative analysis of shotgun proteomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Statistical significance for genomewide studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Dissection of proteolytic 18O labeling: endoprotease-catalyzed 16O-to-18O exchange of truncated peptide substrates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Disease proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Fluorescence two-dimensional difference gel electrophoresis and mass spectrometry based proteomic analysis of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Vascular endothelial growth factor-induced genes in human umbilical vein endothelial cells: relative roles of KDR and Flt-1 receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

cDNA microarray analysis of the gene expression profile of VEGF-activated human umbilical vein endothelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

A human aminoacyl-tRNA synthetase as a regulator of angiogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus

1 reference

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14 July 2018

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Selective inhibition of vascular endothelial growth factor-mediated angiogenesis by cyclosporin A: roles of the nuclear factor of activated T cells and cyclooxygenase 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Quantitation of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry using (18)O-labeled internal standards

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Mechanisms of angiogenesis and arteriogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Molecular dissection of nucleolin's role in growth and cell proliferation: new insights

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Pigment epithelium-derived factor: a potent inhibitor of angiogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Nitric oxide production contributes to the angiogenic properties of vascular endothelial growth factor in human endothelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689778

14 July 2018

Assessing factors for reliable quantitative proteomics based on two-dimensional gel electrophoresis.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Technical, experimental, and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ).

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

c-Jun N-terminal kinase (JNK) positively regulates NFATc2 transactivation through phosphorylation within the N-terminal regulatory domain.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

High-sensitivity analysis of specific peptides in complex samples by selected MS/MS ion monitoring and linear ion trap mass spectrometry: application to biological studies

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Properties of average score distributions of SEQUEST: the probability ratio method.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Global differential non-gel proteomics by quantitative and stable labeling of tryptic peptides with oxygen-18.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Quantitative Proteomic Analysis of Sokotrasterol Sulfate-stimulated Primary Human Endothelial Cells

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M800260-MCP200

21 January 2018

Angiogenesis inhibitors target the endothelial cell cytoskeleton through altered regulation of heat shock protein 27 and cofilin

1 reference

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26 November 2018

Proteome analysis of Saccharomyces cerevisiae under metal stress by two‐dimensional differential gel electrophoresis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19181660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heat shock proteins and other components of cellular machinery for protein synthesis are up-regulated in vascular endothelial cell growth factor-activated human endothelial cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/19181660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Experimental and Statistical Considerations to Avoid False Conclusions in Proteomics Studies Using Differential In-gel Electrophoresis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19181660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PTEN/Akt signaling through epidermal growth factor receptor is prerequisite for angiogenesis by hepatocellular carcinoma cells that is susceptible to inhibition by gefitinib

1 reference

https://pubmed.ncbi.nlm.nih.gov/19181660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated quantification tool for high-throughput proteomics using stable isotope labeling and LC-MSn

1 reference

https://pubmed.ncbi.nlm.nih.gov/19181660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.M800260-MCP200

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19181660%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

release_3c4nti2gonh33nfmdjg6toybcy

1 reference

https://api.fatcat.wiki/v0/release/3c4nti2gonh33nfmdjg6toybcy

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19181660%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19181660%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

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