(Q30494319)

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Probing adenine rings and backbone linkages using base specific isotope-edited Raman spectroscopy: application to group II intron ribozyme domain V.

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Probing adenine rings and backbone linkages using base specific isotope-edited Raman spectroscopy: application to group II intron ribozyme domain V (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

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3

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Europe PubMed Central

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19 January 2020

author name string

Yuanyuan Chen

1

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19 January 2020

Nadukkudy V Eldho

2

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19 January 2020

Paul R Carey

4

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19 January 2020

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publication date

1 April 2010

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19 January 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

49

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19 January 2020

16

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19 January 2020

3427-3435

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Aptamers and riboswitches: perspectives in biotechnology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Riboswitches: from ancient gene-control systems to modern drug targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Direct Raman measurement of an elevated base pKa in the active site of a small ribozyme in a precatalytic conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

pH-dependent UV resonance Raman spectra of cytosine and uracil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Raman crystallography of RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Bioanalytical applications of SERS (surface-enhanced Raman spectroscopy).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

The spliceosome: design principles of a dynamic RNP machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Structural basis for exon recognition by a group II intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Structural dynamics of the ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

A glimpse into the active site of a group II intron and maybe the spliceosome, too.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Detection of innersphere interactions between magnesium hydrate and the phosphate backbone of the HDV ribozyme using Raman crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Crystal Structure of a Self-Spliced Group II Intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

A structural understanding of the dynamic ribosome machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

The multifunctional nucleolus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Fluorescence and solution NMR study of the active site of a 160-kDa group II intron ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Raman crystallography and other biochemical applications of Raman microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Metal ions in the structure and function of RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Structural insights into group II intron catalysis and branch-site selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Base dynamics in a UUCG tetraloop RNA hairpin characterized by 15N spin relaxation: correlations with structure and stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

A UV resonance Raman study of hairpin dimer helices of d(A-G)10 at neutral pH containing intercalated dA residues and alternating dG tetrads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Mutations of the two-nucleotide bulge of D5 of a group II intron block splicing in vitro and in vivo: phenotypes and suppressor mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Role of metal ions in ribozymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Catalytic role of 2'-hydroxyl groups within a group II intron active site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Studies of point mutants define three essential paired nucleotides in the domain 5 substructure of a group II intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Catalytically critical nucleotide in domain 5 of a group II intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Inactivation and reactivation of ribosomal subunits: amino acyl-transfer RNA binding activity of the 30 s subunit of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Inactivation and reactivation of ribosomal subunits: The peptidyl transferase activity of the 50 s subunit of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

Synthesis of small RNAs using T7 RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

The generality of self-splicing RNA: relationship to nuclear mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

A maturase-encoding group IIA intron of yeast mitochondria self-splices in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

20 June 2018

An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

26 November 2018

Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

26 November 2018

A mutant T7 RNA polymerase that is defective in RNA binding and blocked in the early stages of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2863103

26 November 2018

Group II intron self-splicing. Alternative reaction conditions yield novel products

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Catalytic site components common to both splicing steps of a group II intron

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid mutagenesis and purification of phage RNA polymerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The architectural organization and mechanistic function of group II intron structural elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resolution enhanced homonuclear carbon decoupled triple resonance experiments for unambiguous RNA structural characterization

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metal ion binding sites in a group II intron core

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Internal bulge and tetraloop of the catalytic domain 5 of a group II intron ribozyme are flexible: implications for catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In-gel fluorescence probing of RNA-RNA interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/20225830

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI902117W

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20225830%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

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