(Q30497073)

English

Inferring nonneutral evolution from contrasting patterns of polymorphisms and divergences in different protein coding regions of enterovirus 71 circulating in Taiwan during 1998-2003.

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Inferring nonneutral evolution from contrasting patterns of polymorphisms and divergences in different protein coding regions of enterovirus 71 circulating in Taiwan during 1998-2003. (English)

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

protein evolution

0 references

4

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

8

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

object named as

Guang-Wu Chen

6

0 references

object named as

Hurng-Yi Wang

1

0 references

7

object named as

Shin-Ru Shih

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

author name string

Kao-Chien Tsao

2

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Chia-Hung Hsieh

3

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Tzou-Yien Lin

5

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

publication date

25 September 2010

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

294

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Evolutionary genetics of human enterovirus 71: origin, population dynamics, natural selection, and seasonal periodicity of the VP1 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Far upstream element binding protein 2 interacts with enterovirus 71 internal ribosomal entry site and negatively regulates viral translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence

1 reference

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20 June 2018

The genomic and epidemiological dynamics of human influenza A virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Rates of evolutionary change in viruses: patterns and determinants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

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20 June 2018

Genetic evolution of enterovirus 71: epidemiological and pathological implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

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20 June 2018

Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Relaxed phylogenetics and dating with confidence

1 reference

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20 June 2018

Molecular epidemiology of enterovirus 71 over two decades in an Australian urban community.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Frequency and dynamics of recombination within different species of human enteroviruses

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Frequent importation of enterovirus 71 from surrounding countries into the local community of Yamagata, Japan, between 1998 and 2003.

1 reference

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20 June 2018

Enteroviruses as agents of emerging infectious diseases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

1 reference

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20 June 2018

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

1 reference

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20 June 2018

Bayesian coalescent inference of past population dynamics from molecular sequences

1 reference

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20 June 2018

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

1 reference

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20 June 2018

Regulation of picornavirus gene expression

1 reference

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20 June 2018

Libsequence: a C++ class library for evolutionary genetic analysis.

1 reference

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20 June 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

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20 June 2018

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

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20 June 2018

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Molecular Epidemiology of Human Enterovirus 71 Strains and Recent Outbreaks in the Asia-Pacific Region: Comparative Analysis of the VP1 and VP4 Genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Enterovirus 71 outbreaks, Taiwan: occurrence and recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Changing effective population size and the McDonald-Kreitman test

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Testing the neutral theory of molecular evolution with genomic data from Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

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20 June 2018

A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Phylogenetic analysis of enterovirus 71 strains isolated during linked epidemics in Malaysia, Singapore, and Western Australia

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Deaths of children during an outbreak of hand, foot, and mouth disease in sarawak, malaysia: clinical and pathological characteristics of the disease. For the Outbreak Study Group

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Consequences of recombination on traditional phylogenetic analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Evolution of circulating wild poliovirus and of vaccine-derived poliovirus in an immunodeficient patient: a unifying model

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Codon-substitution models for heterogeneous selection pressure at amino acid sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

An epidemic of enterovirus 71 infection in Taiwan. Taiwan Enterovirus Epidemic Working Group.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

MODELTEST: testing the model of DNA substitution

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

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20 June 2018

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

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20 June 2018

Positive Darwinian selection after gene duplication in primate ribonuclease genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Complete nucleotide sequence of enterovirus 71 is distinct from poliovirus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

A method for estimating the numbers of synonymous and nonsynonymous substitutions per site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

New methods for estimating the numbers of synonymous and nonsynonymous substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

20 June 2018

An apparently new enterovirus isolated from patients with disease of the central nervous system

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20 June 2018

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

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20 June 2018

Adaptive protein evolution at the Adh locus in Drosophila

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20 June 2018

Population genetics of polymorphism and divergence

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20 June 2018

Epidemiological, clinical, and pathomorphological characteristics of epidemic poliomyelitis-like disease caused by enterovirus 71

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20 June 2018

The circulation of subgenogroups B5 and C5 of enterovirus 71 in Taiwan from 2006 to 2007.

1 reference

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26 November 2018

Neurodevelopment and Cognition in Children after Enterovirus 71 Infection

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26 November 2018

Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

26 November 2018

Automated phylogenetic detection of recombination using a genetic algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

26 November 2018

Evolution of EV71 genogroup in Taiwan from 1998 to 2005: An emerging of subgenogroup C4 of EV71

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

26 November 2018

Adaptive evolution of non-coding DNA in Drosophila

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26 November 2018

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

26 November 2018

A robust measure of HIV-1 population turnover within chronically infected individuals.

1 reference

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26 November 2018

Negative selection on neutralization epitopes of poliovirus surface proteins: implications for prediction of candidate epitopes for immunization

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26 November 2018

A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes

1 reference

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26 November 2018

Molecular epidemiology of enterovirus 71 in peninsular Malaysia, 1997-2000

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26 November 2018

Proinflammatory cytokine reactions in enterovirus 71 infections of the central nervous system

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26 November 2018

Accuracy and power of bayes prediction of amino acid sites under positive selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2958165

26 November 2018

Sequence type analysis and recombinational tests (START).

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26 November 2018

Protection against lethal enterovirus 71 infection in newborn mice by passive immunization with subunit VP1 vaccines and inactivated virus

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26 November 2018

Homologous recombination in GB virus C/hepatitis G virus

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26 November 2018

Statistical tests for detecting gene conversion.

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26 November 2018

A method for detecting positive selection at single amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/20868512

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Virological diagnosis of enterovirus type 71 infections: Experiences gained during an epidemic of acute CNS diseases in Hungary in 1978

1 reference

https://pubmed.ncbi.nlm.nih.gov/20868512

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detecting recombination from gene trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/20868512

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-10-294

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-10-294

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

ResearchGate publication ID

0 references

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