(Q30497468)

1 October 2017

Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations (English)

1 reference

molecular dynamics simulation

1 October 2017

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6

Piotr E Marszalek

1 reference

1 October 2017

Whasil Lee

1

1 reference

1 October 2017

Xiancheng Zeng

2

1 reference

1 October 2017

Huan-Xiang Zhou

3

1 reference

1 October 2017

Vann Bennett

4

1 reference

1 October 2017

Weitao Yang

5

1 reference

1 October 2017

language of work or name

English

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publication date

24 September 2010

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Journal of Biological Chemistry

1 October 2017

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1 October 2017

285

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1 October 2017

49

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1 October 2017

38167-38172

1 reference

describes a project that uses

1 October 2017

atomic force microscopy

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Fast and forceful refolding of stretched alpha-helical solenoid proteins

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Collapse dynamics of single proteins extended by force

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

The folding cooperativity of a protein is controlled by its chain topology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Designed biomaterials to mimic the mechanical properties of muscles.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Real-time tRNA transit on single translating ribosomes at codon resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Mechanical unfolding of an ankyrin repeat protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Protein folding on the ribosome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Probing ribosome-nascent chain complexes produced in vivo by NMR spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Common structural transitions in explicit-solvent simulations of villin headpiece folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Force and function: probing proteins with AFM-based force spectroscopy.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transfer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Osmolyte-induced separation of the mechanical folding phases of ubiquitin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Converging concepts of protein folding in vitro and in vivo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Reactive flux and folding pathways in network models of coarse-grained protein dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Interrogating single proteins through nanopores: challenges and opportunities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Ligand-dependent equilibrium fluctuations of single calmodulin molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Computer simulations and theory of protein translocation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Measuring internal friction of an ultrafast-folding protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

A pause for thought along the co-translational folding pathway

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Shifting transition states in the unfolding of a large ankyrin repeat protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

The capillarity picture and the kinetics of one-dimensional protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

The protein folding problem

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Single-molecule studies of protein folding.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Protein folding and misfolding: mechanism and principles.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Following translation by single ribosomes one codon at a time.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Solvent molecules bridge the mechanical unfolding transition state of a protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Combining experiment and simulation in protein folding: closing the gap for small model systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Protein folding studied by single-molecule FRET.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Mechanical biochemistry of proteins one molecule at a time.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Folding and unfolding mechanism of highly stable full-consensus ankyrin repeat proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Energetics of protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Single-molecule experiments in vitro and in silico

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Probing a moving target with a plastic unfolding intermediate of an ankyrin-repeat protein.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Prediction of the translocation kinetics of a protein from its mechanical properties

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Bacteriorhodopsin folds into the membrane against an external force

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Direct observation of the three-state folding of a single protein molecule

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Interactions of peptides with a protein pore

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Reaction coordinates and rates from transition paths

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Exploring the energy landscape of GFP by single-molecule mechanical experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

An experimentally determined protein folding energy landscape

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Hypothesis: a helix of ankyrin repeats of the NOMPC-TRP ion channel is the gating spring of mechanoreceptors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Cooperativity in two-state protein folding kinetics.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

The complete folding pathway of a protein from nanoseconds to microseconds

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Sequential unfolding of ankyrin repeats in tumor suppressor p16

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Versatile cloning system for construction of multimeric proteins for use in atomic force microscopy.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Simulated refolding of stretched titin immunoglobulin domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Steered molecular dynamics investigations of protein function.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

The key event in force-induced unfolding of Titin's immunoglobulin domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Atomic force microscopy reveals the mechanical design of a modular protein.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Mechanical unfolding intermediates in titin modules.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Mechanical and chemical unfolding of a single protein: a comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Entropic elasticity of lambda-phage DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Funnels, pathways, and the energy landscape of protein folding: a synthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Intermediates in the folding reactions of small proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992250

Force-clamp spectroscopy monitors the folding trajectory of a single protein

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

A Single-Molecule Perspective on the Role of Solvent Hydrogen Bonds in Protein Folding and Chemical Reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Pathways and kinetic barriers in mechanical unfolding and refolding of RNA and proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

alpha-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Single-molecule structural dynamics of EF-G--ribosome interaction during translocation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Simulation and analysis of single-ribosome translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

The molecular elasticity of the extracellular matrix protein tenascin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Unfolding of proteins and long transient conformations detected by single nanopore recording.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Controlling a single protein in a nanopore through electrostatic traps

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Nanospring behaviour of ankyrin repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

21 January 2018

Hearing: tightrope act.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Protein folding in the cell: reshaping the folding funnel

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Reverse engineering of the giant muscle protein titin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Hidden complexity in the mechanical properties of titin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.179697

Steered molecular dynamics simulations of force-induced protein domain unfolding

21 January 2018

1 reference

12 December 2020

Mechanical Unfolding of a Titin Ig Domain: Structure of Transition State Revealed by Combining Atomic Force Microscopy, Protein Engineering and Molecular Dynamics Simulations

1 reference

12 December 2020

Translocation of a beta-hairpin-forming peptide through a cylindrical tunnel

1 reference

12 December 2020

In search of the hair-cell gating spring elastic properties of ankyrin and cadherin repeats

1 reference

12 December 2020

Repetitive pulling catalyzes co-translocational unfolding of barnase during import through a mitochondrial pore

1 reference

12 December 2020

Understanding the folding mechanism of an alpha-helical hairpin

1 reference

12 December 2020

Folding kinetics of a naturally occurring helical peptide: implication of the folding speed limit of helical proteins

1 reference

12 December 2020

A statistical model for translocation of structured polypeptide chains through nanopores

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M110.179697

1 reference

1 October 2017

1 reference

1 October 2017

PubMed publication ID

20870713

1 reference