(Q30516044)

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Improved atomistic Monte Carlo simulations demonstrate that poly-L-proline adopts heterogeneous ensembles of conformations of semi-rigid segments interrupted by kinks.

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

Improved atomistic Monte Carlo simulations demonstrate that poly-L-proline adopts heterogeneous ensembles of conformations of semi-rigid segments interrupted by kinks (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

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Monte Carlo method

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Aditya Radhakrishnan

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

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Andreas Vitalis

2

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22 January 2020

Albert H Mao

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

Adam T Steffen

4

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22 January 2020

Rohit V Pappu

5

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22 January 2020

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27 February 2012

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22 January 2020

Journal of Physical Chemistry B

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22 January 2020

116

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22 January 2020

23

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22 January 2020

6862-6871

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Solvent Effects on the Energetics of Prolyl Peptide Bond Isomerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Methods for Monte Carlo simulations of biomacromolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Net charge per residue modulates conformational ensembles of intrinsically disordered proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Modulation of polyglutamine conformations and dimer formation by the N-terminus of huntingtin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Conformations and free energy landscapes of polyproline peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Mechanism of cis-inhibition of polyQ fibrillation by polyP: PPII oligomers and the hydrophobic effect

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Thermodynamics of beta-sheet formation in polyglutamine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Atomistic simulations of the effects of polyglutamine chain length and solvent quality on conformational equilibria and spontaneous homodimerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Effect of flexibility and cis residues in single-molecule FRET studies of polyproline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Probing polyproline structure and dynamics by photoinduced electron transfer provides evidence for deviations from a regular polyproline type II helix.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

A 10-A spectroscopic ruler applied to short polyprolines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Stereoelectronic tuning of the structure and stability of the trp cage miniprotein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Flanking sequences profoundly alter polyglutamine toxicity in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Classical statistical mechanics of constraints: a theorem and application to polymers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Stereoelectronic effects on polyproline conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Recognition of proline-rich motifs by protein-protein-interaction domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

The flexibility in the proline ring couples to the protein backbone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Molecular mechanisms for organizing the neuronal cytoskeleton.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Polyproline II helix conformation in a proline-rich environment: a theoretical study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Intrinsically unstructured proteins evolve by repeat expansion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

An electronic effect on protein structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Preferred proline puckerings in cis and trans peptide groups: implications for collagen stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

The hunchback and its neighbours: proline as an environmental modulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Intrinsically disordered protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Distance estimates from paramagnetic enhancements of nuclear relaxation in linear and flexible model peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Effective energy function for proteins in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Protein motifs. 8. The triple-helix motif in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Energy transfer: a spectroscopic ruler

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Conformation of Polypeptides and Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

The Observation of Cis Residues in Poly(L-proline) in Aqueous Solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

20 June 2018

Kinetics of the self-aggregation and film formation of poly-L-proline at high temperatures explored by circular dichroism spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Polyglutamine disruption of the huntingtin exon 1 N terminus triggers a complex aggregation mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Flanking polyproline sequences inhibit beta-sheet structure in polyglutamine segments by inducing PPII-like helix structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Oligoproline effects on polyglutamine conformation and aggregation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Plus and minus sexual agglutinins from Chlamydomonas reinhardtii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Analysis of the conformational dependence of mass-metric tensor determinants in serial polymers with constraints.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

A kinematic view of loop closure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Glycosylated polyproline II rods with kinks as a structural motif in plant hydroxyproline-rich glycoproteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Side-chain effects on peptidyl-prolyl cis/trans isomerisation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Multiple Interactions between Polyphenols and a Salivary Proline-Rich Protein Repeat Result in Complexation and Precipitation†

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Conformational properties of poly-L-proline form II in dilute solution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3376247

26 November 2018

Micelle-like architecture of the monomer ensemble of Alzheimer's amyloid-β peptide in aqueous solution and its implications for Aβ aggregation

1 reference

https://pubmed.ncbi.nlm.nih.gov/22329658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unperturbed dimensions of sequential copolypeptides containing glycine, L-alanine, L-proline, and γ-hydroxy-L-proline

1 reference

https://pubmed.ncbi.nlm.nih.gov/22329658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Side-chain conformational entropy in protein unfolded states

1 reference

https://pubmed.ncbi.nlm.nih.gov/22329658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Entropic exclusion by neurofilament sidearms: a mechanism for maintaining interfilament spacing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22329658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/JP212637R

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

PMC publication ID

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

PubMed publication ID

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22329658%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

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