(Q37469596)

20 August 2017

Conformations and free energy landscapes of polyproline peptides (English)

1 reference

20 August 2017

1 reference

Mahmoud Moradi

1

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author name string

Volodymyr Babin

2

1 reference

20 August 2017

Christopher Roland

3

1 reference

20 August 2017

Thomas A Darden

4

1 reference

20 August 2017

Celeste Sagui

5

1 reference

20 August 2017

language of work or name

English

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publication date

18 November 2009

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Proceedings of the National Academy of Sciences of the United States of America

20 August 2017

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20 August 2017

106

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20 August 2017

49

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20 August 2017

20746-20751

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Probing polyproline structure and dynamics by photoinduced electron transfer provides evidence for deviations from a regular polyproline type II helix.

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

The free energy landscape of small peptides as obtained from metadynamics with umbrella sampling corrections

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Conformational preferences of non-prolyl and prolyl residues.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Conformational preferences of proline oligopeptides.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Polyproline II helix conformation in a proline-rich environment: a theoretical study

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Peptide dendrimers based on polyproline helices

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Preferred proline puckerings in cis and trans peptide groups: implications for collagen stability

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Hypothesis about the Mechanism of Protein Folding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Prolyl isomerases: role in protein folding.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Mechanism of enzymatic and nonenzymatic prolyl cis-trans isomerization.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Host-guest study of left-handed polyproline II helix formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Calculation of conformational properties of oligomers of L-proline.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Determination of kinetic constants for peptidyl prolyl cis-trans isomerases by an improved spectrophotometric assay

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Theory of the Cooperative Transition between Two Ordered Conformations of Poly(L-proline). III. Molecular Theory in the Presence of Solvent

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Theory of the Cooperative Transition between Two Ordered Conformations of Poly(L-proline). II. Molecular Theory in the Absence of Solvent

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Nmr studies of the molecular conformations in the linear oligopeptides H-(L-Ala)n-L-Pro-OH.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

The X-Pro peptide bond as an nmr probe for conformational studies of flexible linear peptides

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Adaptively biased molecular dynamics for free energy calculations

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

A recipe for the computation of the free energy barrier and the lowest free energy path of concerted reactions.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Cis-trans isomerization and puckering of proline residue

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Proline cis-trans isomerization and protein folding

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Side-chain effects on peptidyl-prolyl cis/trans isomerisation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2791577

Energy transfer: a spectroscopic ruler

2 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906500106

Puckering Transition of Proline Residue in Water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906500106

Structure of Poly-L-Proline I

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906500106

Structure of Poly-L-Proline

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906500106

Mutarotation of Poly-L-proline

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0906500106

Conformational study of Ac-Xaa-Pro-NHMe dipeptides: proline puckering and trans/cis imide bond

21 January 2018

1 reference

12 December 2020

Pseudo-prolines: induction of cis/trans-conformational interconversion by decreased transition state barriers

1 reference

12 December 2020

A theoretical estimate of the energy barriers between stable conformations of the proline dimer

1 reference

12 December 2020

Calculation of the Characteristic Ratio of Randomly Coiled Poly(L-proline)

1 reference

12 December 2020

Reverse mutarotation of poly-L-proline

1 reference

12 December 2020

Conformational Studies of Polyprolines

1 reference

12 December 2020

Steric structure of L-proline oligopeptides. II. Far-ultraviolet absorption spectra and optical rotations of L-proline oligopeptides

1 reference

12 December 2020

Critical chain length for polyproline-II structure formation in H-Gly-(Pro)n-OH

1 reference

12 December 2020

Nature of the unfolded state of ribonuclease A: effect of cis-trans X-Pro peptide bond isomerization

1 reference

12 December 2020

Stability of cis, trans, and nonplanar peptide groups

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0906500106

1 reference

20 August 2017

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1 reference

20 August 2017

PubMed publication ID

19923435

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