(Q34478711)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

Sylwia Rodziewicz-Motowidło

16 January 2020

author

2

1 reference

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16 January 2020

Jorge Vila

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Lech Chmurzyński

6

1 reference

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16 January 2020

5

Adam Liwo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

author name string

Joanna Makowska

1

1 reference

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16 January 2020

Katarzyna Bagińska

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Harold A Scheraga

7

1 reference

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16 January 2020

language of work or name

English

0 references

publication date

30 January 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

16 January 2020

published in

1 reference

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16 January 2020

volume

103

1 reference

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16 January 2020

issue

6

1 reference

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16 January 2020

page(s)

1744-1749

1 reference

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Sterics and solvation winnow accessible conformational space for unfolded proteins

16 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Unusual compactness of a polyproline type II structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Neighbor effect on PPII conformation in alanine peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

The polyproline II conformation in short alanine peptides is noncooperative

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Reassessing random-coil statistics in unfolded proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Random-coil behavior and the dimensions of chemically unfolded proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Unfolded state of polyalanine is a segmented polyproline II helix.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Helix formation and the unfolded state of a 52-residue helical protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

The pentapeptide GGAGG has PII conformation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Unfolded state of peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Polyproline II structure in proteins: identification by chiroptical spectroscopies, stability, and functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Native-like mean structure in the unfolded ensemble of small proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

A simple model for polyproline II structure in unfolded states of alanine-based peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Polyproline II structure in a sequence of seven alanine residues.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Protein folding and unfolding at atomic resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Structural and dynamic characterization of an unfolded state of poplar apo-plastocyanin formed under nondenaturing conditions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Random coil chemical shifts in acidic 8 M urea: implementation of random coil shift data in NMRView

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

MOLMOL: a program for display and analysis of macromolecular structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Chemical shifts as a tool for structure determination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

6 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

6 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Folding of immunogenic peptide fragments of proteins in water solution. II. The nascent helix

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Reassessment of the electronic circular dichroism criteria for random coil conformations of poly(L-lysine) and the implications for protein folding and denaturation studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Are time-averaged restraints necessary for nuclear magnetic resonance refinement? A model study for DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Truncated staphylococcal nuclease is compact but disordered

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Comprehensive NOE characterization of a partially folded large fragment of staphylococcal nuclease Delta131Delta, using NMR methods with improved resolution.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Robustness of the long-range structure in denatured staphylococcal nuclease to changes in amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Simulations of the structural and dynamical properties of denatured proteins: the "molten coil" state of bovine pancreatic trypsin inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Polyproline II helix is the preferred conformation for unfolded polyalanine in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Existence of specific "folds" in polyproline II ensembles of an "unfolded"alanine peptide detected by molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Sequence-dependent correction of random coil NMR chemical shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Three-dimensional structure of ectatomin from Ectatomma tuberculatum ant venom

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Fast and accurate computation of the 13C chemical shifts for an alanine-rich peptide

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413657

Unfolded, yes, but random? Never!

27 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510549103

Distributions of intramolecular distances in the reduced and denatured states of bovine pancreatic ribonuclease A. Folding initiation structures in the C-terminal portions of the reduced protein

21 January 2018

1 reference

12 December 2020

Amide proton temperature coefficients as hydrogen bond indicators in proteins

1 reference

12 December 2020

NMR identification of left-handed polyproline type II helices

1 reference

12 December 2020

Structural correspondence between the alpha-helix and the random-flight chain resolves how unfolded proteins can have native-like properties

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures

1 reference

12 December 2020

Protein chemical shift analysis: a practical guide

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0510549103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16446433%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

16446433

1 reference