(Q33920025)

30 July 2017

title

Unusual compactness of a polyproline type II structure (English)

1 reference

30 July 2017

6

Sebastian Doniach

1 reference

30 July 2017

Jan Lipfert

2

0 references

Ian S Millett

4

object named as

Ian S Millett

1 reference

30 July 2017

Wilfred F van Gunsteren

5

object named as

Wilfred F van Gunsteren

1 reference

30 July 2017

Bojan Zagrovic

1

1 reference

30 July 2017

Eric J Sorin

3

1 reference

30 July 2017

Vijay S Pande

7

1 reference

30 July 2017

language of work or name

English

0 references

publication date

5 August 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

1 reference

30 July 2017

volume

102

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30 July 2017

issue

33

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30 July 2017

page(s)

11698-11703

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Empirical force-field assessment: The interplay between backbone torsions and noncovalent term scaling

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Exploring the helix-coil transition via all-atom equilibrium ensemble simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

The polyproline II conformation in short alanine peptides is noncooperative

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Reassessing random-coil statistics in unfolded proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Random-coil behavior and the dimensions of chemically unfolded proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

UV Raman demonstrates that alpha-helical polyalanine peptides melt to polyproline II conformations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Preferred peptide backbone conformations in the unfolded state revealed by the structure analysis of alanine-based (AXA) tripeptides in aqueous solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Unfolded state of polyalanine is a segmented polyproline II helix.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Simulation of the folding equilibrium of α-helical peptides: A comparison of the generalized Born approximation with explicit solvent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Unfolded state of peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Determinants of the polyproline II helix from modeling studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Is polyproline II a major backbone conformation in unfolded proteins?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Native-like mean structure in the unfolded ensemble of small proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

A simple model for polyproline II structure in unfolded states of alanine-based peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Polyproline II structure in a sequence of seven alanine residues.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Polyproline II helical structure in protein unfolded states: lysine peptides revisited

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Protein folding and unfolding at atomic resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Changes in biomolecular conformation seen by small angle X-ray scattering

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Subpicosecond conformational dynamics of small peptides probed by two-dimensional vibrational spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Structural and dynamic characterization of an unfolded state of poplar apo-plastocyanin formed under nondenaturing conditions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Random coil chemical shifts in acidic 8 M urea: implementation of random coil shift data in NMRView

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Truncated staphylococcal nuclease is compact but disordered

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187952

Comprehensive NOE characterization of a partially folded large fragment of staphylococcal nuclease Delta131Delta, using NMR methods with improved resolution.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Robustness of the long-range structure in denatured staphylococcal nuclease to changes in amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Simulations of the structural and dynamical properties of denatured proteins: the "molten coil" state of bovine pancreatic trypsin inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Polyproline II helix is the preferred conformation for unfolded polyalanine in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

The conformation of tetraalanine in water determined by polarized Raman, FT-IR, and VCD spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Raman spectroscopic characterization of secondary structure in natively unfolded proteins: alpha-synuclein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

GROMACS: A message-passing parallel molecular dynamics implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Role of solvent in determining conformational preferences of alanine dipeptide in water.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

The GROMOS Biomolecular Simulation Program Package

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

Unfolded, yes, but random? Never!

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409693102

New chain conformations of poly(glutamic acid) and polylysine

21 January 2018

1 reference

12 December 2020

Circular dichroism of poly-L-proline in an unordered conformation

1 reference

12 December 2020

Poly(pro)II helices in globular proteins: identification and circular dichroic analysis

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures

1 reference

12 December 2020

Structural correspondence between the alpha-helix and the random-flight chain resolves how unfolded proteins can have native-like properties

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0409693102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference