(Q30525332)

13 August 2017

Determination of ligand pathways in globins: apolar tunnels versus polar gates (English)

1 reference

13 August 2017

9

1 reference

PubMed publication ID

23 June 2017

5

Sylvia Dewilde

0 references

Marco Nardini

object named as

Marco Nardini

8

0 references

John S. Olson

object named as

John S Olson

10

0 references

author name string

Mallory D Salter

1

1 reference

13 August 2017

George C Blouin

2

1 reference

13 August 2017

Jayashree Soman

3

1 reference

13 August 2017

Eileen W Singleton

4

1 reference

13 August 2017

Sylvia Dewilde

5

1 reference

13 August 2017

Luc Moens

6

1 reference

13 August 2017

Alessandra Pesce

7

1 reference

13 August 2017

language of work or name

English

0 references

publication date

1 August 2012

1 reference

Journal of Biological Chemistry

13 August 2017

1 reference

13 August 2017

287

1 reference

13 August 2017

40

1 reference

13 August 2017

33163-33178

1 reference

describes a project that uses

13 August 2017

PyMOL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=PMC3460423

cites work

High Resolution Crystal Structures of the Cerebratulus lacteus Mini-Hb in the Unligated and Carbomonoxy States

1 reference

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MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

14 July 2018

1 reference

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Structure and dynamics of Mycobacterium tuberculosis truncated hemoglobin N: insights from NMR spectroscopy and molecular dynamics simulations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Blocking the Gate to Ligand Entry in Human Hemoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Ligand Migration in the Apolar Tunnel of Cerebratulus lacteus Mini-Hemoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

PHENIX: a comprehensive Python-based system for macromolecular structure solution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Ligand diffusion in globins: simulations versus experiment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Distal histidine stabilizes bound O2 and acts as a gate for ligand entry in both subunits of adult human hemoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Theoretical investigations of nitric oxide channeling in Mycobacterium tuberculosis truncated hemoglobin N.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

The Apolar Channel in Cerebratulus lacteus Hemoglobin Is the Route for O2 Entry and Exit

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Ligand binding to truncated hemoglobin N from Mycobacterium tuberculosis is strongly modulated by the interplay between the distal heme pocket residues and internal water

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Identification of ligand-binding pathways in truncated hemoglobins using locally enhanced sampling molecular dynamics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Ligand pathways in myoglobin: a review of Trp cavity mutations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Transient ligand docking sites in Cerebratulus lacteus mini-hemoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Extended subnanosecond structural dynamics of myoglobin revealed by Laue crystallography

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Ligand migration pathway and protein dynamics in myoglobin: a time-resolved crystallographic study on L29W MbCO.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Coot: model-building tools for molecular graphics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Picosecond time-resolved X-ray crystallography: probing protein function in real time

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

The structural dynamics of myoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Thr-E11 regulates O2 affinity in Cerebratulus lacteus mini-hemoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

CO migration in native and mutant myoglobin: atomistic simulations for the understanding of protein function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Truncated hemoglobins and nitric oxide action

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

The 109 residue nerve tissue minihemoglobin from Cerebratulus lacteus highlights striking structural plasticity of the alpha-helical globin fold

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Protein conformational relaxation and ligand migration in myoglobin: a nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Mycobacterium tuberculosis hemoglobin N displays a protein tunnel suited for O2 diffusion to the heme

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

The finer things in X-ray diffraction data collection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Initial trajectory of carbon monoxide after photodissociation from myoglobin at cryogenic temperatures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

High-resolution crystal structures of distal histidine mutants of sperm whale myoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Structural and functional effects of apolar mutations of the distal valine in myoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Discovery of new ligand binding pathways in myoglobin by random mutagenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Phe-46(CD4) orients the distal histidine for hydrogen bonding to bound ligands in sperm whale myoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Nuclear magnetic resonance studies of xenon-129 with myoglobin and hemoglobin.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Reaction of myoglobin with phenylhydrazine: a molecular doorstop.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

The binding of xenon of sperm whale deoxymyoglobin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Binding of xenon to sperm whale myoglobin.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Structure of alkaline metmyoglobin-xenon complex.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

High-level expression of sperm whale myoglobin in Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Discrimination between oxygen and carbon monoxide and inhibition of autooxidation by myoglobin. Site-directed mutagenesis of the distal histidine

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

A novel site-directed mutant of myoglobin with an unusually high O2 affinity and low autooxidation rate.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460423

Reactivity of ferric Aplysia and sperm whale myoglobins towards imidazole

14 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Ligand migration in sperm whale myoglobin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Mapping the pathways for O2 entry into and exit from myoglobin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Time-dependent atomic coordinates for the dissociation of carbon monoxide from myoglobin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Watching a protein as it functions with 150-ps time-resolved x-ray crystallography

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Molecular dynamics simulation of sperm whale myoglobin: effects of mutations and trapped CO on the structure and dynamics of cavities

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Toward quantitative simulations of carbon monoxide escape pathways in myoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Internal cavities and ligand passageways in human hemoglobin characterized by molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Locally enhanced sampling molecular dynamics study of the dioxygen transport in human cytoglobin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Topology and thermodynamics of gaseous ligands diffusion paths in human neuroglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

The mini-hemoglobins in neural and body wall tissue of the nemertean worm, Cerebratulus lacteus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Ligand-induced dynamical regulation of NO conversion in Mycobacterium tuberculosis truncated hemoglobin-N

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Binding of Xenon to Horse Haemoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.392258

Measurement of rate constants for reactions of O2, CO, and NO with hemoglobin

21 January 2018

1 reference

12 December 2020

An x-ray study of azide methaemoglobin

1 reference

12 December 2020

Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O

1 reference

12 December 2020

Ultrafast rotation and trapping of carbon monoxide dissociated from myoglobin

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M112.392258

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

22859299

1 reference