(Q30525788)

13 August 2017

Sequence-dependent sliding kinetics of p53 (English)

1 reference

13 August 2017

6

Alan R Fersht

1 reference

13 August 2017

8

0 references

author name string

Jason S Leith

1

1 reference

13 August 2017

Anahita Tafvizi

2

1 reference

13 August 2017

Fang Huang

3

1 reference

13 August 2017

William E Uspal

4

1 reference

13 August 2017

Patrick S Doyle

5

1 reference

13 August 2017

Leonid A Mirny

7

1 reference

13 August 2017

language of work or name

English

0 references

publication date

25 September 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

13 August 2017

1 reference

13 August 2017

109

1 reference

13 August 2017

41

1 reference

13 August 2017

16552-16557

1 reference

Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Real-time observation of transcription initiation and elongation on an endogenous yeast gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

A single-molecule characterization of p53 search on DNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

The expanding universe of p53 targets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Noncanonical DNA motifs as transactivation targets by wild type and mutant p53

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Visualizing one-dimensional diffusion of proteins along DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Tumor suppressor p53 slides on DNA with low friction and high stability

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Divergent evolution of human p53 binding sites: cell cycle versus apoptosis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Probing transcription factor dynamics at the single-molecule level in a living cell

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

BstYI bound to noncognate DNA reveals a "hemispecific" complex: implications for DNA scanning

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

A systems approach to measuring the binding energy landscapes of transcription factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

How proteins search for their specific sites on DNA: the role of DNA conformation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

A global map of p53 transcription-factor binding sites in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Toward an integrated model of protein-DNA recognition as inferred from NMR studies on the Lac repressor system

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

How do site-specific DNA-binding proteins find their targets?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Protein topology determines binding mechanism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

14 July 2018

Surfing the p53 network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Single-molecule imaging of RNA polymerase-DNA interactions in real time

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Visualization of single molecules of RNA polymerase sliding along DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Facilitated target location in biological systems

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478643

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

14 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

p53 linear diffusion along DNA requires its C terminus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

Cooperative binding of tetrameric p53 to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

Comparative binding of p53 to its promoter and DNA recognition elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120452109

NMR spectroscopy reveals the solution dimerization interface of p53 core domains bound to their consensus DNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23012405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Facilitated search for specific genomic targets by p53 C-terminal basic DNA binding domain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23012405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single molecule measurements of repressor protein 1D diffusion on DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23012405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1120452109

1 reference

13 August 2017

0 references

1 reference

13 August 2017

PubMed publication ID

23012405

1 reference