(Q30558563)

12 August 2017

Direct integration of intensity-level data from Affymetrix and Illumina microarrays improves statistical power for robust reanalysis (English)

1 reference

12 August 2017

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3

Alexey A Larionov

1 reference

12 August 2017

Andrew H Sims

6

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author name string

Arran K Turnbull

1

1 reference

12 August 2017

Robert R Kitchen

2

1 reference

12 August 2017

Lorna Renshaw

4

1 reference

12 August 2017

J Michael Dixon

5

1 reference

12 August 2017

21 August 2012

1 reference

12 August 2017

1 reference

12 August 2017

5

1 reference

12 August 2017

35

1 reference

describes a project that uses

12 August 2017

affy

object named as

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Comprehensive literature review and statistical considerations for microarray meta-analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Empirical comparison of cross-platform normalization methods for gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Relative impact of key sources of systematic noise in Affymetrix and Illumina gene-expression microarray experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Microarray-based class discovery for molecular classification of breast cancer: analysis of interobserver agreement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Content-based microarray search using differential expression profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Tackling the widespread and critical impact of batch effects in high-throughput data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Consistency of predictive signature genes and classifiers generated using different microarray platforms.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Cross-platform expression microarray performance in a mouse model of mitochondrial disease therapy.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Biomarkers of dietary energy restriction in women at increased risk of breast cancer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Gene expression profiles differentiating between breast cancers clinically responsive or resistant to letrozole

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Supervised risk predictor of breast cancer based on intrinsic subtypes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Bioinformatics and breast cancer: what can high-throughput genomic approaches actually tell us?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Linear mixed effects models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Changes in breast cancer transcriptional profiles after treatment with the aromatase inhibitor, letrozole

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Improved precision and accuracy for microarrays using updated probe set definitions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

A gene-expression signature to predict survival in breast cancer across independent data sets.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

The molecular portraits of breast tumors are conserved across microarray platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Adjusting batch effects in microarray expression data using empirical Bayes methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Bioconductor: open software development for computational biology and bioinformatics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Discovery of estrogen receptor alpha target genes and response elements in breast tumor cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Adjustment of systematic microarray data biases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Significance analysis of microarrays applied to the ionizing radiation response

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Cluster analysis and display of genome-wide expression patterns

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Random-effects models for longitudinal data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Nonlinear mixed effects models for repeated measures data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443058

Approaches towards expression profiling the response to treatment

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Impact of estrogen deprivation on gene expression profiles of normal postmenopausal breast tissue in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Gene expression profiling of response to mTOR inhibitor everolimus in pre-operatively treated post-menopausal women with oestrogen receptor-positive breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Confounding effects in "A six-gene signature predicting breast cancer lung metastasis".

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Merging two gene-expression studies via cross-platform normalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Statistical aspects of quantitative real-time PCR experiment design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

Design and optimization of reverse-transcription quantitative PCR experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

ADAPT: a database of affymetrix probesets and transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1755-8794-5-35

The effect of GeneChip gene definitions on the microarray study of cancers

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22909195

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1755-8794-5-35

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

22909195

1 reference