(Q30576979)

13 August 2017

Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region (English)

1 reference

Marie-Laure Endale Ahanda

13 August 2017

1 reference

1 reference

Marie-Laure Endale Ahanda

1

0 references

Dario Beraldi

Dario Beraldi

7

0 references

Jordi Estellé

Jordi Estellé

3

0 references

Claire Rogel-Gaillard

Claire Rogel-Gaillard

12

0 references

James M Reecy

James M Reecy

13

0 references

author name string

Eric R Fritz

2

1 reference

13 August 2017

Zhi-Liang Hu

4

1 reference

13 August 2017

Ole Madsen

5

1 reference

13 August 2017

Martien A M Groenen

6

1 reference

13 August 2017

Ronan Kapetanovic

8

1 reference

13 August 2017

David A Hume

9

1 reference

13 August 2017

Robert R R Rowland

10

1 reference

13 August 2017

Joan K Lunney

11

1 reference

13 August 2017

Elisabetta Giuffra

14

1 reference

13 August 2017

language of work or name

English

0 references

publication date

6 November 2012

1 reference

13 August 2017

1 reference

13 August 2017

7

1 reference

13 August 2017

11

1 reference

13 August 2017

e48607

1 reference

Creative Commons Attribution 4.0 International

13 August 2017

start time

6 November 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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20 June 2018

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MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship

20 June 2018

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Pig bone marrow-derived macrophages resemble human macrophages in their response to bacterial lipopolysaccharide

20 June 2018

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Solexa sequencing identification of conserved and novel microRNAs in backfat of Large White and Chinese Meishan pigs

20 June 2018

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An alternative mode of microRNA target recognition

20 June 2018

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Catalog of microRNA seed polymorphisms in vertebrates

20 June 2018

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Fast computation and applications of genome mappability

20 June 2018

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The Influence of 3'UTRs on MicroRNA Function Inferred from Human SNP Data

20 June 2018

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Evolution of microRNA diversity and regulation in animals

20 June 2018

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The molecular origin and consequences of escape from miRNA regulation by HLA-C alleles

20 June 2018

1 reference

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A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing

20 June 2018

1 reference

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Transcription variants of SLA-7, a swine non classical MHC class I gene

20 June 2018

1 reference

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Analysis of porcine MHC using microarrays

20 June 2018

1 reference

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Differential microRNA regulation of HLA-C expression and its association with HIV control

20 June 2018

1 reference

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A parsimonious model for gene regulation by miRNAs.

20 June 2018

1 reference

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MicroRNA functions in stress responses.

20 June 2018

1 reference

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Efficient use of accessibility in microRNA target prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Whole blood-derived miRNA profiles as potential new tools for ovarian cancer screening

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

TargetSpy: a supervised machine learning approach for microRNA target prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

20 June 2018

1 reference

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BRAT: bisulfite-treated reads analysis tool

20 June 2018

1 reference

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Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates

20 June 2018

1 reference

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Lost in translation: an assessment and perspective for computational microRNA target identification

20 June 2018

1 reference

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Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

TopHat: discovering splice junctions with RNA-Seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

MicroRNAs: target recognition and regulatory functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Revisiting the principles of microRNA target recognition and mode of action

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

MicroRNA control in the immune system: basic principles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Most mammalian mRNAs are conserved targets of microRNAs

20 June 2018

1 reference

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NCBI Reference Sequences: current status, policy and new initiatives

20 June 2018

1 reference

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Molecular genetics of the swine major histocompatibility complex, the SLA complex

20 June 2018

1 reference

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Widespread changes in protein synthesis induced by microRNAs

20 June 2018

1 reference

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Experimental validation of miRNA targets

20 June 2018

1 reference

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The vertebrate genome annotation (Vega) database

20 June 2018

1 reference

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The role of site accessibility in microRNA target recognition

20 June 2018

1 reference

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Allele-specific targeting of microRNAs to HLA-G and risk of asthma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

A mammalian microRNA expression atlas based on small RNA library sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Polymorphic miRNA-mediated gene regulation: contribution to phenotypic variation and disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Regulation of porcine classical and nonclassical MHC class I expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Inference of miRNA targets using evolutionary conservation and pathway analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

The evolution of gene regulation by transcription factors and microRNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Fast and effective prediction of microRNA/target duplexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

MicroRNA-directed cleavage of HOXB8 mRNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

MicroRNA targets in Drosophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Database resources of the National Center for Biotechnology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3490867

Potent effect of target structure on microRNA function.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048607

The genomic sequence and analysis of the swine major histocompatibility complex

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048607

Polymorphic Polymorphic MicroRNA-Target Interactions: A Novel Source of Phenotypic Variation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23139801

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0048607

1 reference

13 August 2017

0 references

1 reference

13 August 2017

1 reference