(Q30579994)

19 September 2017

Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032 (English)

1 reference

Corynebacterium glutamicum

19 September 2017

0 references

object named as

Corynebacterium glutamicum

1 reference

4

Alfred Pühler

0 references

Jörn Kalinowski

6

object named as

Jörn Kalinowski

1 reference

19 September 2017

Almut Mentz

1

1 reference

19 September 2017

Armin Neshat

2

1 reference

19 September 2017

Katharina Pfeifer-Sancar

3

1 reference

19 September 2017

Christian Rückert

5

1 reference

19 September 2017

language of work or name

English

0 references

publication date

19 October 2013

1 reference

19 September 2017

1 reference

19 September 2017

14

1 reference

19 September 2017

714

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-714

19 September 2017

0 references

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20 June 2018

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Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

20 June 2018

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20 June 2018

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Corynebacterium glutamicum as a potent biocatalyst for the bioconversion of pentose sugars to value-added products

20 June 2018

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20 June 2018

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Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis

20 June 2018

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Regulation by small RNAs in bacteria: expanding frontiers

20 June 2018

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Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.

20 June 2018

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Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor.

20 June 2018

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Discovery of bacterial sRNAs by high-throughput sequencing

20 June 2018

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The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages

20 June 2018

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Sigma factors and promoters in Corynebacterium glutamicum

20 June 2018

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FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

20 June 2018

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Bacterial antisense RNAs: how many are there, and what are they doing?

20 June 2018

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A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

20 June 2018

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An antisense RNA that governs the expression kinetics of a multifunctional virulence gene

20 June 2018

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Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

20 June 2018

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Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis

20 June 2018

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The primary transcriptome of the major human pathogen Helicobacter pylori

20 June 2018

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CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

20 June 2018

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PcaO positively regulates pcaHG of the beta-ketoadipate pathway in Corynebacterium glutamicum

20 June 2018

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A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus

20 June 2018

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Experimental approaches for the discovery and characterization of regulatory small RNA.

20 June 2018

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Identification of small RNAs in Mycobacterium tuberculosis

20 June 2018

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Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays

20 June 2018

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Regulation of Corynebacterium glutamicum heat shock response by the extracytoplasmic-function sigma factor SigH and transcriptional regulators HspR and HrcA.

20 June 2018

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Regulatory RNAs in bacteria

20 June 2018

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RNA-Seq: a revolutionary tool for transcriptomics

20 June 2018

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Small non-coding RNAs in Streptomyces coelicolor

20 June 2018

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The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules

20 June 2018

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High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs

20 June 2018

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Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

20 June 2018

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Corynebacterium glutamicum contains 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases that display novel biochemical features

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Biology of trans-translation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate:sugar phosphotransferase system (PTS) in Corynebacterium glutamicum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

eggNOG: automated construction and annotation of orthologous groups of genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Identification of small RNAs in diverse bacterial species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

6S RNA: a small RNA regulator of transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The DeoR-type regulator SugR represses expression of ptsG in Corynebacterium glutamicum.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Transcriptional interference--a crash course

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Functional analysis of sigH expression in Corynebacterium glutamicum.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Fast and reliable prediction of noncoding RNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Assessing computational tools for the discovery of transcription factor binding sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Identification of AcnR, a TetR-type repressor of the aconitase gene acn in Corynebacterium glutamicum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

GadY, a small-RNA regulator of acid response genes in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Mauve: multiple alignment of conserved genomic sequence with rearrangements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

WebLogo: A Sequence Logo Generator

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Industrial production of amino acids by coryneform bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

The Corynebacterium glutamicum genome: features and impacts on biotechnological processes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Comparative sequence analysis of tmRNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Attenuation in the control of expression of bacterial operons

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Mechanism of killer gene activation. Antisense RNA-dependent RNase III cleavage ensures rapid turn-over of the stable hok, srnB and pndA effector messenger RNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-714

Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-714

A probabilistic method for identifying start codons in bacterial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-714

Two-component systems of Corynebacterium glutamicum: deletion analysis and involvement of the PhoS-PhoR system in the phosphate starvation response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-714

RNAshapes: an integrated RNA analysis package based on abstract shapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-714

Identification of a furA cis antisense RNA in the cyanobacterium Anabaena sp. PCC 7120.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-714

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046766

Chromosomally encoded small antisense RNA in Corynebacterium glutamicum

26 November 2018

1 reference

12 December 2020

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

12 December 2020

Attenuation control of ilvBNC in Corynebacterium glutamicum: evidence of leader peptide formation without the presence of a ribosome binding site

1 reference

12 December 2020

Transcription attenuation: a highly conserved regulatory strategy used by bacteria

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-714

1 reference

Dimensions Publication ID

19 September 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-714

1 reference

19 September 2017

1 reference