(Q30583445)

15 August 2017

Inference of gene regulatory networks from genome-wide knockout fitness data (English)

1 reference

15 August 2017

Michael S Samoilov

4

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Adam Arkin

object named as

Adam P Arkin

series ordinal

3

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author name string

Liming Wang

series ordinal

1

1 reference

15 August 2017

Xiaodong Wang

series ordinal

2

1 reference

15 August 2017

language of work or name

English

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publication date

27 December 2012

1 reference

15 August 2017

9

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

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15 August 2017

29

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15 August 2017

3

1 reference

15 August 2017

338-346

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Creative Commons Attribution-NonCommercial 3.0 Unported

15 August 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions

20 June 2018

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Rapid GAL gene switch of Saccharomyces cerevisiae depends on nuclear Gal3, not nucleocytoplasmic trafficking of Gal3 and Gal80

20 June 2018

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Network inference from time-dependent Omics data

20 June 2018

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Reverse engineering of metabolic networks, a critical assessment

20 June 2018

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A universal TagModule collection for parallel genetic analysis of microorganisms

20 June 2018

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Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action

20 June 2018

1 reference

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20 June 2018

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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

20 June 2018

1 reference

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Chemogenomic approaches to elucidation of gene function and genetic pathways

20 June 2018

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Recent developments in parameter estimation and structure identification of biochemical and genomic systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Gene regulatory network reconstruction using conditional mutual information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Boolean network models of cellular regulation: prospects and limitations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

The chemical genomic portrait of yeast: uncovering a phenotype for all genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Application of bioinformatics for DNA microarray data to bioscience, bioengineering and medical fields

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

20 June 2018

1 reference

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ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

DNA-microarray analysis of brain cancer: molecular classification for therapy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Genomic analysis of regulatory network dynamics reveals large topological changes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Random Boolean network models and the yeast transcriptional network

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

A gene-coexpression network for global discovery of conserved genetic modules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

On the deduction of chemical reaction pathways from measurements of time series of concentrations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Functional profiling of the Saccharomyces cerevisiae genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Systematic screen for human disease genes in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Reverse engineering gene networks using singular value decomposition and robust regression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Modeling and simulation of genetic regulatory systems: a literature review

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Dynamic modeling of gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Using Bayesian networks to analyze expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Gene expression profiling, genetic networks, and cellular states: an integrating concept for tumorigenesis and drug discovery

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Modeling gene expression with differential equations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Identification of genetic networks from a small number of gene expression patterns under the Boolean network model.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Modeling stochastic gene expression: implications for haploinsufficiency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Transcriptional regulation in the yeast GAL gene family: a complex genetic network

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

Two systems of glucose repression of the GAL1 promoter in Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562072

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS634

Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS634

Modeling T-cell activation using gene expression profiling and state-space models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS634

An extended Kalman filtering approach to modeling nonlinear dynamic gene regulatory networks via short gene expression time series

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS634

Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS634

On delayed genetic regulatory networks with polytopic uncertainties: robust stability analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23271269

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTS634

1 reference

journals/bioinformatics/WangWAS13

15 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

15 August 2017

PubMed publication ID

23271269

1 reference