(Q33600806)

28 July 2017

title

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes (English)

1 reference

28 July 2017

0 references

0 references

Dmitry A Rodionov

7

0 references

Mikhail Gelfand

object named as

Mikhail S Gelfand

series ordinal

4

0 references

Pavel S Novichkov

series ordinal

1

object named as

Pavel S Novichkov

1 reference

28 July 2017

2

Olga N Laikova

1 reference

28 July 2017

6

Inna Dubchak

1 reference

28 July 2017

5

Adam P Arkin

1 reference

28 July 2017

Elena S Novichkova

3

1 reference

28 July 2017

language of work or name

English

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publication date

1 November 2009

1 reference

28 July 2017

published in

Nucleic Acids Research

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28 July 2017

volume

38

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28 July 2017

issue

Database issue

1 reference

28 July 2017

page(s)

D111-8

1 reference

Structure and Function of an ADP-Ribose-Dependent Transcriptional Regulator of NAD Metabolism

28 July 2017

cites work

1 reference

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information

21 June 2018

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Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

21 June 2018

1 reference

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Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae).

21 June 2018

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Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

21 June 2018

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RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

21 June 2018

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Comparative genomics of regulation of heavy metal resistance in Eubacteria

21 June 2018

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Evolution of transcriptional regulatory networks in microbial genomes

21 June 2018

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Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups

21 June 2018

1 reference

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Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes

21 June 2018

1 reference

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Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks

21 June 2018

1 reference

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 June 2018

1 reference

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21 June 2018

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Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.

21 June 2018

1 reference

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WebLogo: A Sequence Logo Generator

21 June 2018

1 reference

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Comparative genomics of bacterial zinc regulons: enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Genome wide identification of regulatory motifs in Bacillus subtilis

21 June 2018

1 reference

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Conservation of the biotin regulon and the BirA regulatory signal in Eubacteria and Archaea.

21 June 2018

1 reference

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Conservation of the binding site for the arginine repressor in all bacterial lineages

21 June 2018

1 reference

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Recognition of regulatory sites by genomic comparison.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808921

MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19884135

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP894

1 reference

journals/nar/NovichkovLNGADR10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference