(Q30583968)

14 August 2017

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data (English)

1 reference

14 August 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

author

Frank Møller Aarestrup

6

Frank M Aarestrup

1 reference

Pimlapas Leekitcharoenphon

14 August 2017

Pimlapas Leekitcharoenphon

1

0 references

Rolf S. Kaas

Rolf S Kaas

2

0 references

author name string

Martin Christen Frølund Thomsen

3

1 reference

14 August 2017

Carsten Friis

4

1 reference

14 August 2017

Simon Rasmussen

5

1 reference

14 August 2017

language of work or name

English

0 references

publication date

13 December 2012

1 reference

14 August 2017

1 reference

14 August 2017

13 Suppl 7

1 reference

14 August 2017

S6

1 reference

describes a project that uses

14 August 2017

MUMmer

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-s7-s6

0 references

cites work

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

High-resolution single nucleotide polymorphism analysis distinguishes recrudescence and reinfection in recurrent invasive nontyphoidal Salmonella typhimurium disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Multilocus sequence typing of total-genome-sequenced bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Bacterial epidemiology and biology - lessons from genome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

The variant call format and VCFtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Genotype and SNP calling from next-generation sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Evolution of MRSA during hospital transmission and intercontinental spread

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Fast and accurate short read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

SNP detection for massively parallel whole-genome resequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Choosing an appropriate bacterial typing technique for epidemiologic studies.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

Fast algorithms for large-scale genome alignment and comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3521233

10.1186/1471-2164-13-S7-S6

20 June 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

14 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-s7-s6

1 reference

14 August 2017

1 reference