(Q30584755)

English

Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci

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scholarly article

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Europe PubMed Central

19 October 2017

Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci (English)

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19 October 2017

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13 June 2020

Volker J Schmid

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Justin Demmerle

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Neil Brockdorff

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Lothar Schermelleh

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Daniel Smeets

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Yolanda Markaki

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Anna Tattermusch

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Michael Sterr

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Susanne Fiedler

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Jens Popken

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Heinrich Leonhardt

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Thomas Cremer

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Marion Cremer

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28 April 2014

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Epigenetics & Chromatin

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13 June 2020

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13 June 2020

describes a project that uses

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based on heuristic

inferred from PubMed Central ID database lookup

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Reprogramming of fibroblast nuclei in cloned bovine embryos involves major structural remodeling with both striking similarities and differences to nuclear phenotypes of in vitro fertilized embryos

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Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

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28 July 2018

Genome architecture: domain organization of interphase chromosomes

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The hierarchy of the 3D genome

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28 July 2018

Site-specific silencing of regulatory elements as a mechanism of X inactivation

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28 July 2018

Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations

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28 July 2018

Smchd1-dependent and -independent pathways determine developmental dynamics of CpG island methylation on the inactive X chromosome.

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Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

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The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives fo

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28 July 2018

Spatial partitioning of the regulatory landscape of the X-inactivation centre

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28 July 2018

Topological domains in mammalian genomes identified by analysis of chromatin interactions

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New and Xisting regulatory mechanisms of X chromosome inactivation

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Chromosome silencing mechanisms in X-chromosome inactivation: unknown unknowns.

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Tandemly repeated DNA families in the mouse genome

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Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation

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28 July 2018

YY1 tethers Xist RNA to the inactive X nucleation center

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28 July 2018

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

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28 July 2018

X-inactivation and X-reactivation: epigenetic hallmarks of mammalian reproduction and pluripotent stem cells

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28 July 2018

A scaffold for X chromosome inactivation.

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28 July 2018

Genes that escape from X inactivation

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A system for imaging the regulatory noncoding Xist RNA in living mouse embryonic stem cells.

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Mechanistic insights into chromosome-wide silencing in X inactivation.

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28 July 2018

X-chromosome inactivation: molecular mechanisms from the human perspective

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28 July 2018

Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment.

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28 July 2018

Chromatin structure and nuclear organization dynamics during X-chromosome inactivation.

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28 July 2018

eXIST with matrix-associated proteins

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28 July 2018

Histone acetylation controls the inactive X chromosome replication dynamics

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28 July 2018

The fractal globule as a model of chromatin architecture in the cell

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28 July 2018

Labeling nuclear DNA using DAPI.

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28 July 2018

Breaking the diffraction barrier: super-resolution imaging of cells

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Charting histone modifications and the functional organization of mammalian genomes

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28 July 2018

The matrix protein hnRNP U is required for chromosomal localization of Xist RNA.

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28 July 2018

Functional diversity of the hnRNPs: past, present and perspectives

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28 July 2018

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28 July 2018

Chromosome territories

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A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat

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28 July 2018

Xist RNA is confined to the nuclear territory of the silenced X chromosome throughout the cell cycle

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28 July 2018

Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy

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Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

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Cracking the RNA polymerase II CTD code

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The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding

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PCNA, the maestro of the replication fork

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The ins and outs of gene regulation and chromosome territory organisation

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Radial chromatin positioning is shaped by local gene density, not by gene expression

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Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks.

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Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis

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28 July 2018

The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences

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28 July 2018

Attenuated spread of X-inactivation in an X;autosome translocation

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28 July 2018

A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value

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28 July 2018

A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization

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28 July 2018

Mammalian X-chromosome inactivation: an epigenetics paradigm

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28 July 2018

Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome

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28 July 2018

GC/AT-content spikes as genomic punctuation marks

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28 July 2018

Recent advances in X-chromosome inactivation

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28 July 2018

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28 July 2018

Scaffold attachment factor A (SAF-A) is concentrated in inactive X chromosome territories through its RGG domain

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28 July 2018

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28 July 2018

Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH.

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28 July 2018

Initial sequencing and comparative analysis of the mouse genome

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28 July 2018

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28 July 2018

Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

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28 July 2018

Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture

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28 July 2018

A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation

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28 July 2018

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

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28 July 2018

Tsix, a gene antisense to Xist at the X-inactivation centre

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28 July 2018

Spatial and temporal dynamics of DNA replication sites in mammalian cells

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28 July 2018

Stabilization and localization of Xist RNA are controlled by separate mechanisms and are not sufficient for X inactivation

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28 July 2018

X chromosome inactivation is mediated by Xist RNA stabilization

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28 July 2018

Three-dimensional reconstruction of painted human interphase chromosomes: active and inactive X chromosome territories have similar volumes but differ in shape and surface structure

1 reference

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28 July 2018

XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

28 July 2018

DAPI: a DNA-specific fluorescent probe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

28 July 2018

Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

28 July 2018

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

28 July 2018

Characterization of SAF-A, a novel nuclear DNA binding protein from HeLa cells with high affinity for nuclear matrix/scaffold attachment DNA elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

28 July 2018

X chromosome dosage compensation: how mammals keep the balance

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Xist regulation and function explored

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Chromosome territories, nuclear architecture and gene regulation in mammalian cells

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Chromosome territories--a functional nuclear landscape.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

A top-down analysis of Xa- and Xi-territories reveals differences of higher order structure at ≥ 20 Mb genomic length scales.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

The facultative heterochromatin of the inactive X chromosome has a distinctive condensed ultrastructure.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Spatial separation of Xist RNA and polycomb proteins revealed by superresolution microscopy

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Stabilization of Xist RNA mediates initiation of X chromosome inactivation.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Long-range cis effects of ectopic X-inactivation centres on a mouse autosome

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Retinoic acid accelerates downregulation of the Xist repressor, Oct4, and increases the likelihood of Xist activation when Tsix is deficient.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Remodeling of nuclear architecture by the thiodioxoxpiperazine metabolite chaetocin

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Histone-GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Targeted mutagenesis of Tsix leads to nonrandom X inactivation.

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-7-8

21 January 2018

Fluorescence in situ hybridization applications for super-resolution 3D structured illumination microscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

26 November 2018

OMX: a new platform for multimodal, multichannel wide-field imaging.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

26 November 2018

Functional nuclear architecture studied by microscopy: present and future

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

26 November 2018

DNA replication and nuclear architecture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

26 November 2018

Mouse Xist expression begins at zygotic genome activation and is timed by a zygotic clock.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

26 November 2018

Quantitative RT-PCR assays show Xist RNA levels are low in mouse female adult tissue, embryos and embryoid bodies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4108088

26 November 2018

Localization of newly-synthesized DNA in a mammalian cell as visualized by high resolution autoradiography

1 reference

https://pubmed.ncbi.nlm.nih.gov/25057298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis

1 reference

https://pubmed.ncbi.nlm.nih.gov/25057298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Perichromatin fibrils are in situ forms of nascent transcripts

1 reference

https://pubmed.ncbi.nlm.nih.gov/25057298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/25057298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of Chromosome Territories in the Functional Compartmentalization of the Cell Nucleus

1 reference

https://pubmed.ncbi.nlm.nih.gov/25057298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and dynamics of human interphase chromosome territories in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/25057298

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1756-8935-7-8

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25057298%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1756-8935-7-8

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25057298%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25057298%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

ResearchGate publication ID

0 references

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