(Q30586977)

13 October 2017

A phylogenomic census of molecular functions identifies modern thermophilic archaea as the most ancient form of cellular life (English)

1 reference

13 October 2017

1 reference

1

1 reference

PMCID

4164138

13 October 2017

Gustavo Caetano-Anollés

series ordinal

3

object named as

Gustavo Caetano-Anollés

1 reference

13 October 2017

Kyung Mo Kim

2

1 reference

PMCID

4164138

13 October 2017

language of work or name

1 reference

31 August 2014

1 reference

13 October 2017

1 reference

13 October 2017

2014

1 reference

13 October 2017

706468

1 reference

Creative Commons Attribution 3.0 Unported

13 October 2017

start time

1 January 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

A tree of cellular life inferred from a genomic census of molecular functions

1 reference

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Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

20 June 2018

1 reference

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Comparative analysis of proteomes and functionomes provides insights into origins of cellular diversification

20 June 2018

1 reference

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The common ancestor of archaea and eukarya was not an archaeon

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Bacterial adaptation through loss of function

20 June 2018

1 reference

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20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Origin and evolution of protein fold designs inferred from phylogenomic analysis of CATH domain structures in proteomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Viral evolution: Primordial cellular origins and late adaptation to parasitism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

A general framework of persistence strategies for biological systems helps explain domains of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Benefits of using molecular structure and abundance in phylogenomic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Reductive evolution of proteomes and protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Phylogeny and evolution of the Archaea: one hundred genomes later

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The proteomic complexity and rise of the primordial ancestor of diversified life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The ancient history of the structure of ribonuclease P and the early origins of Archaea

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Gene amplification and adaptive evolution in bacteria.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The evolutionary history of the structure of 5S ribosomal RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The origin, evolution and structure of the protein world.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The archaebacterial origin of eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Parallel adaptations to high temperatures in the Archaean eon.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The origin and evolution of tRNA inferred from phylogenetic analysis of structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Dendroscope: An interactive viewer for large phylogenetic trees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The ring of life provides evidence for a genome fusion origin of eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The Gene Ontology (GO) database and informatics resource

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Pathogenic archaea: do they exist?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

An evolutionarily structured universe of protein architecture

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Testing the hypothesis of common ancestry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Did DNA replication evolve twice independently?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Horizontal gene transfer among genomes: the complexity hypothesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The genome sequence of Rickettsia prowazekii and the origin of mitochondria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

The hydrogen hypothesis for the first eukaryote

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Formation of 4-hydroxybenzoate in Escherichia coli: characterization of the ubiC gene and its encoded enzyme chorismate pyruvate-lyase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Molecular cloning, functional expression, and signaling characteristics of a C-C chemokine receptor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Coenzyme F420 dependence of the methylenetetrahydromethanopterin dehydrogenase of Methanobacterium thermoautotrophicum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Structure, biosynthesis, and physicochemical properties of archaebacterial lipids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Cloning and sequencing of Escherichia coli ubiC and purification of chorismate lyase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164138

Evolution of proton pumping ATPases: Rooting the tree of life

20 June 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Proteome evolution and the metabolic origins of translation and cellular life

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Polyphasic evidence delineating the root of life and roots of biological domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

The tree of life might be rooted in the branch leading to Nanoarchaeota

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Domain tree-based analysis of protein architecture evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Convergent evolution of domain architectures (is rare).

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

Congruence of evidence for a Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F706468

On earlier states of the biochemical system

21 January 2018

1 reference

12 December 2020

Global phylogeny determined by the combination of protein domains in proteomes

1 reference

12 December 2020

Conformational diversity and protein evolution--a 60-year-old hypothesis revisited

1 reference

12 December 2020

Evolution of catalytic proteins or on the origin of enzyme species by means of natural selection

1 reference

12 December 2020

Identifiers

DOI

10.1155/2014/706468

1 reference

13 October 2017

1 reference

13 October 2017

1 reference

PMCID

4164138