(Q30591850)

25 June 2017

title

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites (English)

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25 June 2017

Ivan Kulakovskiy

1

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Ilya E. Vorontsov

object named as

Ilya Vorontsov

5

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Vsevolod Makeev

object named as

Vsevolod Makeev

6

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author name string

Victor Levitsky

2

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25 June 2017

Dmitry Oshchepkov

3

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25 June 2017

Leonid Bryzgalov

4

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25 June 2017

publication date

16 January 2013

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Journal of Bioinformatics and Computational Biology

25 June 2017

published in

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25 June 2017

volume

11

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25 June 2017

issue

1

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25 June 2017

page(s)

1340004

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DNA binding sites: representation and discovery

25 June 2017

cites work

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https://api.crossref.org/works/10.1142%2FS0219720013400040

Applied bioinformatics for the identification of regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Tree-based position weight matrix approach to model transcription factor binding site profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Additivity in protein-DNA interactions: how good an approximation is it?

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

The thermodynamics of DNA structural motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Improved models for transcription factor binding site identification using nonindependent interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Deep and wide digging for binding motifs in ChIP-Seq data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Dinucleotide weight matrices for predicting transcription factor binding sites: generalizing the position weight matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013400040

10.1142/S0219720013400040

21 January 2018

Identifiers

DOI

1 reference

journals/jbcb/KulakovskiyLOBVM13

25 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference