(Q30616764)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Aaron Golden

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Jessica C Mar

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

John Greally

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1

N Ari Wijetunga

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

6

Francine H Einstein

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

author name string

Yong Mei Zhao

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

language of work or name

English

0 references

publication date

20 October 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

page(s)

5195

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

21 February 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Measuring cell-type specific differential methylation in human brain tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.

28 July 2018

1 reference

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Passive and active DNA methylation and the interplay with genetic variation in gene regulation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Inactive or moderately active human promoters are enriched for inter-individual epialleles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Recursively partitioned mixture model clustering of DNA methylation data using biologically informed correlation structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Dynamic DNA methylation across diverse human cell lines and tissues

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Epigenome-Wide Association Studies (EWAS) in Cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Stochastic choice of allelic expression in human neural stem cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

DNA methylation arrays as surrogate measures of cell mixture distribution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Regulated noise in the epigenetic landscape of development and disease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

The influence of cis-regulatory elements on DNA methylation fidelity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

ChromHMM: automating chromatin-state discovery and characterization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Epigenome-wide association studies for common human diseases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Increased methylation variation in epigenetic domains across cancer types

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

A sustained dietary change increases epigenetic variation in isogenic mice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

A twin approach to unraveling epigenetics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

A unique chromatin signature uncovers early developmental enhancers in humans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Histone H3K27ac separates active from poised enhancers and predicts developmental state

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Tackling the epigenome: challenges and opportunities for collaboration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Genome-scale DNA methylation maps of pluripotent and differentiated cells

28 July 2018

1 reference

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Epigenetic natural variation in Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

Intra- and interindividual epigenetic variation in human germ cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

CD34-positive cells: biology and clinical relevance

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300104

A map of the cis-regulatory sequences in the mouse genome

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Epigenetic and epigenomic variation in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Dual DNA methylation patterns in the CNS reveal developmentally poised chromatin and monoallelic expression of critical genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Extensive variation and low heritability of DNA methylation identified in a twin study

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Optimized design and data analysis of tag-based cytosine methylation assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

A novel recursive Bayesian learning-based method for the efficient and accurate segmentation of video with dynamic background.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

A flexible R package for nonnegative matrix factorization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Semi-supervised Nonnegative Matrix Factorization for gene expression deconvolution: a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

The CpG island shore of the GLT-1 gene acts as a methylation-sensitive enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

Mutagenic deamination of cytosine residues in DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS6195

21 January 2018

Identifiers

DOI

10.1038/NCOMMS6195

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

21 February 2020

ADS bibcode

2014NatCo...5.5195W

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

25327398

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25327398%20AND%20SRC:MED&resulttype=core&format=json