(Q30638258)

English

A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: reconciliation of DNA bending models with crystal structure data

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scholarly article

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Europe PubMed Central

PubMed publication ID

25 June 2017

A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: reconciliation of DNA bending models with crystal structure data (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

crystal structure

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author name string

Liu Y

1

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

Beveridge DL

2

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

publication date

1 February 2001

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

Journal of Biomolecular Structure and Dynamics

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Europe PubMed Central

PubMed publication ID

25 June 2017

18

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

505-526

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Bent helical structure in kinetoplast DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

DNA structure in human RNA polymerase II promoters

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Defining the structure of irregular nucleic acids: conventions and principles

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

What is the basis of sequence-directed curvature in DNAs containing A tracts?

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

The thermodynamics of DNA structures that contain lesions of guanine tetrads

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Calorimetry: a tool for DNA and ligand-DNA studies

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

DNA bending at adenine . thymine tracts

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Crystal structure of CATGGCCATG and its implications for A-tract bending models

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Bending and curvature calculations in B-DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Calibration of DNA curvature and a unified description of sequence-directed bending

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

The intrinsic curvature of DNA in solution.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Sequence periodicities in chicken nucleosome core DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Unconventional helical phasing of repetitive DNA motifs reveals their relative bending contributions

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Dehydrating agents sharply reduce curvature in DNAs containing A tracts

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

MPD and DNA bending in crystals and in solution.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Statistical analysis of DNA duplex structural features

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Nucleic acid crystallography: a view from the nucleic acid database.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Sequence-dependent DNA structure: tetranucleotide conformational maps

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Nucleic acids: theory and computer simulation, Y2K.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

DNA bending by small, mobile multivalent cations

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

A free energy analysis of nucleic acid base stacking in aqueous solution

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

The ten helical twist angles of B-DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Equation of State Calculations by Fast Computing Machines

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Use of a 3D structure data base for understanding sequence-dependent conformational aspects of DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Analysis of local helix geometry in three B-DNA decamers and eight dodecamers

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

The assessment of the geometry of dinucleotide steps in double-helical DNA; a new local calculation scheme.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Sequence-directed curvature of DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Determination of the extent of DNA bending by an adenine-thymine tract

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Curved DNA without AA/TT dinucleotide step

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Sequence-directed curvature of DNA

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Structural details of an adenine tract that does not cause DNA to bend

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2001.10506684

21 January 2018

Identifiers

10.1080/07391102.2001.10506684

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 June 2017

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