(Q30657282)

10 August 2017

Protein functional features are reflected in the patterns of mRNA translation speed (English)

1 reference

10 August 2017

Daniel López

1

1 reference

10 August 2017

Florencio Pazos

series ordinal

2

1 reference

10 August 2017

language of work or name

English

0 references

publication date

9 July 2015

1 reference

10 August 2017

1 reference

10 August 2017

16

1 reference

10 August 2017

513

1 reference

Creative Commons Attribution 4.0 International

10 August 2017

start time

9 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12864-015-1734-7

0 references

cites work

Local slowdown of translation by nonoptimal codons promotes nascent-chain recognition by SRP in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Codon-by-codon modulation of translational speed and accuracy via mRNA folding.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Positively charged residues are the major determinants of ribosomal velocity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Non-optimal codon usage affects expression, structure and function of clock protein FRQ

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Good codons, bad transcript: large reductions in gene expression and fitness arising from synonymous mutations in a key enzyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Sequence-structure relationships in yeast mRNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Understanding the contribution of synonymous mutations to human disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

NCBI GEO: archive for functional genomics data sets--10 years on

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Ongoing and future developments at the Universal Protein Resource

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Translationally optimal codons associate with aggregation-prone sites in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Genome-wide measurement of RNA secondary structure in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Synonymous codon usage influences the local protein structure observed

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

An evolutionarily conserved mechanism for controlling the efficiency of protein translation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

How the sequence of a gene can tune its translation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

ANCHOR: web server for predicting protein binding regions in disordered proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Architecture and secondary structure of an entire HIV-1 RNA genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Coding-sequence determinants of gene expression in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

The Universal Protein Resource (UniProt) 2009

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

A "silent" polymorphism in the MDR1 gene changes substrate specificity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Codon usage bias and tRNA abundance in Drosophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Protein secondary structural types are differentially coded on messenger RNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Ribosome-mediated translational pause and protein domain organization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Codon usage and tRNA content in unicellular and multicellular organisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4497413

Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1734-7

Whole genome analysis reveals a high incidence of non-optimal codons in secretory signal sequences of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1734-7

Measurement of average decoding rates of the 61 sense codons in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1734-7

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1734-7

Translational selection and molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1734-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1734-7

Evidence of rare codon clusters within Escherichia coli coding regions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26155933

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-1734-7

1 reference

Dimensions Publication ID

10 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-1734-7

Fatcat ID

release_trmgxb6yzrgitmbzgzs3xmbajm

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/trmgxb6yzrgitmbzgzs3xmbajm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

10 August 2017

1 reference