(Q30658188)

12 October 2017

Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher (English)

1 reference

12 October 2017

1

1 reference

12 October 2017

9

1 reference

12 October 2017

8

Raphaël Voituriez

0 references

Claire Dugast-Darzacq

object named as

Claire Dugast-Darzacq

3

0 references

Florence Proux

object named as

Florence Proux

6

0 references

Maxime Dahan

object named as

Maxime Dahan

10

0 references

author name string

Lydia Boudarène

2

1 reference

12 October 2017

Jiji Chen

4

1 reference

12 October 2017

Christian Richter

5

1 reference

12 October 2017

Olivier Bénichou

7

1 reference

12 October 2017

Raphaël Voituriez

8

1 reference

12 October 2017

language of work or name

English

0 references

publication date

7 July 2015

1 reference

12 October 2017

Nature Communications

1 reference

12 October 2017

6

1 reference

12 October 2017

1

1 reference

1 July 2019

page(s)

7357

1 reference

Creative Commons Attribution 4.0 International

12 October 2017

start time

7 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4507003/fullTextXML

inferred from PubMed Central ID database lookup

cites work

A general method to improve fluorophores for live-cell and single-molecule microscopy

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3D imaging of Sox2 enhancer clusters in embryonic stem cells

20 June 2018

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Probing short-range protein Brownian motion in the cytoplasm of living cells

20 June 2018

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Protein-DNA binding in the absence of specific base-pair recognition

20 June 2018

1 reference

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Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells.

20 June 2018

1 reference

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Single-molecule analysis of transcription factor binding at transcription sites in live cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Geometry of the nucleus: a perspective on gene expression regulation

20 June 2018

1 reference

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Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Single cell correlation fractal dimension of chromatin: a framework to interpret 3D single molecule super-resolution

20 June 2018

1 reference

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Single-molecule dynamics of enhanceosome assembly in embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

The transcription factor titration effect dictates level of gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Quantifying transcription factor kinetics: at work or at play?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Real-time dynamics of RNA polymerase II clustering in live human cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Sequence-dependent sliding kinetics of p53

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

A benchmark for chromatin binding measurements in live cells.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Classes of fast and specific search mechanisms for proteins on DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Excitation spectra and brightness optimization of two-photon excited probes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Intra-nuclear mobility and target search mechanisms of transcription factors: a single-molecule perspective on gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Towards a molecular view of transcriptional control.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Real-time observation of transcription initiation and elongation on an endogenous yeast gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Visualizing one-dimensional diffusion of eukaryotic DNA repair factors along a chromatin lattice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Nonspecifically bound proteins spin while diffusing along DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Different gene regulation strategies revealed by analysis of binding motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Insights from genomic profiling of transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

An end to 40 years of mistakes in DNA-protein association kinetics?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

A census of human transcription factors: function, expression and evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

How DNA coiling enhances target localization by proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Visualizing one-dimensional diffusion of proteins along DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

High-density mapping of single-molecule trajectories with photoactivated localization microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

In vivo dynamics of RNA polymerase II transcription.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Probing transcription factor dynamics at the single-molecule level in a living cell

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Nuclear organization of the genome and the potential for gene regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

From silencing to gene expression: real-time analysis in single cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Two mutations in the tetracycline repressor change the inducer anhydrotetracycline to a corepressor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Exploring the sequence space for tetracycline-dependent transcriptional activators: novel mutations yield expanded range and sensitivity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

High mobility of proteins in the mammalian cell nucleus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Molecular dynamics in living cells observed by fluorescence correlation spectroscopy with one- and two-photon excitation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

The lac repressor-operator interaction. 3. Kinetic studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Dynamics of repressor-operator recognition: the Tn10-encoded tetracycline resistance control.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Single particle tracking. Analysis of diffusion and flow in two-dimensional systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Tight control of gene expression in mammalian cells by tetracycline-responsive promoters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4507003

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

20 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

The lac repressor displays facilitated diffusion in living cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

The cell biology of genomes: bringing the double helix to life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

Anomalous diffusion in disordered media: Statistical mechanisms, models and physical applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

The random walk's guide to anomalous diffusion: a fractional dynamics approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

PSF shaping using adaptive optics for three-dimensional single-molecule super-resolution imaging and tracking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

Facilitated Diffusion of Proteins on Chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

FISH-quant: automatic counting of transcripts in 3D FISH images

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS8357

Thermodynamic analysis of tetracycline-mediated induction of Tet repressor by a quantitative methylation protection assay

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26151127

12 December 2020

inferred from PubMed ID database lookup

Geometry-controlled kinetics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26151127

12 December 2020

inferred from PubMed ID database lookup

ViSP: representing single-particle localizations in three dimensions.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26151127

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NCOMMS8357

1 reference

Dimensions Publication ID

12 October 2017

0 references

0 references

1 reference

12 October 2017

1 reference