(Q30663457)

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Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol

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Europe PubMed Central

18 August 2017

Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol (English)

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Europe PubMed Central

18 August 2017

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Edith A Perez

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Europe PubMed Central

18 August 2017

author name string

Zhifu Sun

1

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Europe PubMed Central

18 August 2017

Yan W Asmann

2

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Europe PubMed Central

18 August 2017

Asha Nair

3

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Europe PubMed Central

18 August 2017

Yuji Zhang

4

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Europe PubMed Central

18 August 2017

Liguo Wang

5

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Europe PubMed Central

18 August 2017

Krishna R Kalari

6

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Europe PubMed Central

18 August 2017

Aditya V Bhagwate

7

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Europe PubMed Central

18 August 2017

Tiffany R Baker

8

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Europe PubMed Central

18 August 2017

Jennifer M Carr

9

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Europe PubMed Central

18 August 2017

Jean-Pierre A Kocher

10

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Europe PubMed Central

18 August 2017

E Aubrey Thompson

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18 August 2017

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19 August 2013

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18 August 2017

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Europe PubMed Central

18 August 2017

8

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18 August 2017

8

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Europe PubMed Central

18 August 2017

e71745

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Europe PubMed Central

18 August 2017

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Creative Commons Attribution 4.0 International

19 August 2013

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edgeR

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747248

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

1 reference

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Whole-transcriptome RNAseq analysis from minute amount of total RNA.

1 reference

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Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq

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A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

1 reference

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20 June 2018

Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747248

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Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing

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20 June 2018

Integrative genomics viewer

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RNA sequencing: advances, challenges and opportunities

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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A scaling normalization method for differential expression analysis of RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747248

20 June 2018

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747248

20 June 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747248

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Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

1 reference

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20 June 2018

Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays

1 reference

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20 June 2018

Mammary involution and breast cancer risk: transgenic models and clinical studies

1 reference

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20 June 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

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Antisense transcription in the mammalian transcriptome

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Optimization of whole-transcriptome amplification from low cell density deep-sea microbial samples for metatranscriptomic analysis

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21 January 2018

Gene expression profiling of RNA extracted from FFPE tissues: NuGEN technologies' whole-transcriptome amplification system.

1 reference

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21 January 2018

Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling.

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Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

1 reference

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21 January 2018

Identifiers

10.1371/JOURNAL.PONE.0071745

1 reference

Europe PubMed Central

18 August 2017

2013PLoSO...871745S

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1 reference

Europe PubMed Central

18 August 2017

1 reference

Europe PubMed Central

18 August 2017

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