(Q30663836)

26 June 2017

title

Poor fit to the multispecies coalescent is widely detectable in empirical data (English)

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26 June 2017

Sarah M Hird

2

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Jeremy M. Brown

object named as

Jeremy M Brown

3

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author name string

Noah M Reid

1

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26 June 2017

Tara A Pelletier

4

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26 June 2017

John D McVay

5

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26 June 2017

Jordan D Satler

6

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26 June 2017

Bryan C Carstens

7

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26 June 2017

publication date

28 August 2013

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26 June 2017

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26 June 2017

volume

63

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26 June 2017

issue

3

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26 June 2017

page(s)

322-333

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Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

26 June 2017

cites work

1 reference

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Multilocus analysis of a taxonomically densely sampled dataset reveal extensive non-monophyly in the avian family Locustellidae

21 January 2018

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Non-monophyly and intricate morphological evolution within the avian family Cettiidae revealed by multilocus analysis of a taxonomically densely sampled dataset

21 January 2018

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Bayesian estimation of concordance among gene trees.

21 January 2018

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Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae).

21 January 2018

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Bayesian model adequacy and choice in phylogenetics.

21 January 2018

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PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy

21 January 2018

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Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

21 January 2018

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Gene and species trees of a Neotropical group of treefrogs: genetic diversification in the Brazilian Atlantic Forest and the origin of a polyploid species

21 January 2018

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Accuracy and precision of species trees: effects of locus, individual, and base pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae).

21 January 2018

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Balancing selection and its effects on sequences in nearby genome regions

21 January 2018

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Joint inference of population assignment and demographic history

21 January 2018

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Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

21 January 2018

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Molecular phylogenetic relationships and phenotypic diversity in miniaturized toadlets, genus Brachycephalus (Amphibia: Anura: Brachycephalidae).

21 January 2018

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Discordance of species trees with their most likely gene trees.

21 January 2018

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Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

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Relaxed phylogenetics and dating with confidence

21 January 2018

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BEAST: Bayesian evolutionary analysis by sampling trees

21 January 2018

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Bayesian random local clocks, or one rate to rule them all

21 January 2018

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Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

21 January 2018

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Is a new and general theory of molecular systematics emerging?

21 January 2018

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High-resolution species trees without concatenation

21 January 2018

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Ancient hybridization and an Irish origin for the modern polar bear matriline

21 January 2018

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Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

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Reconstructing the phylogeny of “Buarremon” brush-finches and near relatives (Aves, Emberizidae) from individual gene trees

21 January 2018

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Multiple markers and multiple individuals refine true seal phylogeny and bring molecules and morphology back in line

21 January 2018

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Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling

21 January 2018

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Statistical tests of models of DNA substitution

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Ancient hybridization and mitochondrial capture between two species of chipmunks.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Phylogenetic and coalescent strategies of species delimitation in snubnose darters (Percidae: Etheostoma).

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Bayesian inference of species trees from multilocus data

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

21 January 2018

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Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Generating samples under a Wright-Fisher neutral model of genetic variation

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Bayesian inference of phylogeny and its impact on evolutionary biology

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Molecular systematics of two enigmatic genera Psittacella and Pezoporus illuminate the ecological radiation of Australo-Papuan parrots (Aves: Psittaciformes)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Is recombination a problem for species-tree analyses?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus)

21 January 2018

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The accuracy of species tree estimation under simulation: a comparison of methods

21 January 2018

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A species tree for the Australo-Papuan Fairy-wrens and allies (Aves: Maluridae).

21 January 2018

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Hybridization as an invasion of the genome

21 January 2018

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Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae).

21 January 2018

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Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays.

21 January 2018

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Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

21 January 2018

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New heuristic methods for joint species delimitation and species tree inference.

21 January 2018

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APE: Analyses of Phylogenetics and Evolution in R language

21 January 2018

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Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history

21 January 2018

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Clade age and species richness are decoupled across the eukaryotic tree of life

21 January 2018

1 reference

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Unified modeling of gene duplication, loss, and coalescence using a locus tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Multilocus species tree analyses resolve the radiation of the widespread Bufo bufo species group (Anura, Bufonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Phylogeny estimation of the radiation of western North American chipmunks (Tamias) in the face of introgression using reproductive protein genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Assessment of substitution model adequacy using frequentist and Bayesian methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

The probability of topological concordance of gene trees and species trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Multilocus phylogeny and species delimitation within the Natterer's bat species complex in the Western Palearctic

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Inferring species trees from gene trees in a radiation of California trapdoor spiders (Araneae, Antrodiaetidae, Aliatypus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

phangorn: phylogenetic analysis in R

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

TreeFix: statistically informed gene tree error correction using species trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Bayesian species delimitation using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

Evolution by gene duplication: an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT057

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYT057

1 reference

26 June 2017

1 reference