(Q30667045)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

The outer mucus layer hosts a distinct intestinal microbial niche (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Melissa A.E. Lawson

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Bettina Stolp

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

14

Uwe Sauer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

10

Sandra Rupp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

15

Kathy D McCoy

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

16

Andrew J Macpherson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

13

Bärbel Stecher

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

author name string

Hai Li

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Julien P Limenitakis

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Markus B Geuking

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Madeleine Wyss

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Sandrine Brugiroux

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Irene Keller

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Jamie A Macpherson

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Jens V Stein

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

language of work or name

English

0 references

publication date

22 September 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

page(s)

8292

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

24 February 2020

copyright license

start time

22 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

20 June 2018

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Effects of bowel cleansing on the intestinal microbiota

20 June 2018

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The composition of the gut microbiota shapes the colon mucus barrier.

20 June 2018

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

20 June 2018

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STRING v10: protein-protein interaction networks, integrated over the tree of life

20 June 2018

1 reference

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Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota.

20 June 2018

1 reference

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Foxp3(+) T cells regulate immunoglobulin a selection and facilitate diversification of bacterial species responsible for immune homeostasis

20 June 2018

1 reference

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Microbial sensing by goblet cells controls immune surveillance of luminal antigens in the colon

20 June 2018

1 reference

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NLRP6 inflammasome orchestrates the colonic host-microbial interface by regulating goblet cell mucus secretion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

20 June 2018

1 reference

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Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

IMG 4 version of the integrated microbial genomes comparative analysis system

20 June 2018

1 reference

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Mucus enhances gut homeostasis and oral tolerance by delivering immunoregulatory signals

20 June 2018

1 reference

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Intraluminal containment of commensal outgrowth in the gut during infection-induced dysbiosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Discovery of β-1,4-D-mannosyl-N-acetyl-D-glucosamine phosphorylase involved in the metabolism of N-glycans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Gastrointestinal transit measurements in mice with 99mTc-DTPA-labeled activated charcoal using NanoSPECT-CT.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

The mucin Muc2 limits pathogen burdens and epithelial barrier dysfunction during Salmonella enterica serovar Typhimurium colitis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Host-derived nitrate boosts growth of E. coli in the inflamed gut

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

HMDB 3.0--The Human Metabolome Database in 2013

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Fast renewal of the distal colonic mucus layers by the surface goblet cells as measured by in vivo labeling of mucin glycoproteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Goblet cells deliver luminal antigen to CD103+ dendritic cells in the small intestine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Fast gapped-read alignment with Bowtie 2

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Eating for two: how metabolism establishes interspecies interactions in the gut

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Reprogramming of Escherichia coli K-12 metabolism during the initial phase of transition from an anaerobic to a micro-aerobic environment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Understanding the role of gut microbiome-host metabolic signal disruption in health and disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Search and clustering orders of magnitude faster than BLAST

20 June 2018

1 reference

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QIIME allows analysis of high-throughput community sequencing data

20 June 2018

1 reference

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Dynamics of intracellular bacterial replication at the single cell level.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

The RAST Server: rapid annotations using subsystems technology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Colonization dynamics of altered Schaedler flora is influenced by gender, aging, and Helicobacter hepaticus infection in the intestines of Swiss Webster mice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Mouse intestine selects nonmotile flhDC mutants of Escherichia coli MG1655 with increased colonizing ability and better utilization of carbon sources

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Glycan foraging in vivo by an intestine-adapted bacterial symbiont

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Enterobactin: an archetype for microbial iron transport

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Biosynthesis of phosphatidylcholine in bacteria.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Escherichia coli F-18 and E. coli K-12 eda mutants do not colonize the streptomycin-treated mouse large intestine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin-treated mice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Regulation of fatty acid degradation in Escherichia coli: analysis by operon fusion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Colonization of the streptomycin-treated mouse large intestine by a human fecal Escherichia coli strain: role of growth in mucus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Presence of K88-specific receptors in porcine ileal mucus is age dependent

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595636

Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS9292

High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection-time-of-flight mass spectrometry.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS9292

Preservation of Mucus in Histological Sections, Immunostaining of Mucins in Fixed Tissue, and Localization of Bacteria with FISH

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS9292

Selection procedure for deregulated iron transport mutants (fur) in Escherichia coli K 12: fur not only affects iron metabolism

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26392213

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The adherent gastrointestinal mucus gel layer: thickness and physical state in vivo

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26392213

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS9292

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

24 February 2020

ADS bibcode

2015NatCo...6.8292L

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

26392213

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26392213%20AND%20SRC:MED&resulttype=core&format=json