(Q30702378)

6 November 2017

Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data (English)

1 reference

6 November 2017

11

Gynheung An

1 reference

6 November 2017

Ki-Hong Jung

1

1 reference

6 November 2017

Hyun-Jung Gho

2

1 reference

6 November 2017

Hoi-Khoanh Giong

3

1 reference

6 November 2017

Anil Kumar Nalini Chandran

4

1 reference

6 November 2017

Quynh-Nga Nguyen

5

1 reference

6 November 2017

Heebak Choi

6

1 reference

6 November 2017

Tian Zhang

7

1 reference

6 November 2017

Wen Wang

8

1 reference

6 November 2017

Jin-Hyun Kim

9

1 reference

6 November 2017

Hong-Kyu Choi

10

1 reference

6 November 2017

10 August 2013

1 reference

6 November 2017

1 reference

6 November 2017

6

1 reference

6 November 2017

1

1 reference

6 November 2017

19

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Creative Commons Attribution 2.0 Generic

6 November 2017

start time

10 August 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

affy

object named as

Affy package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

OGRO: The Overview of functionally characterized Genes in Rice online database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

RiceXPro version 3.0: expanding the informatics resource for rice transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Origin of Oryza sativa in China inferred by nucleotide polymorphisms of organelle DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Tracing soybean domestication history: From nucleotide to genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Mono-allelic retrotransposon insertion addresses epigenetic transcriptional repression in human genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

NCBI GEO: archive for functional genomics data sets--10 years on

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Gene expression profiles deciphering rice phenotypic variation between Nipponbare (Japonica) and 93-11 (Indica) during oxidative stress

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Rice histone deacetylase genes display specific expression patterns and developmental functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

The role of WRKY transcription factors in plant immunity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Indirect defense responses to herbivory in grasses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

MicroRNA-directed regulation: to cleave or not to cleave

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Towards a better bowl of rice: assigning function to tens of thousands of rice genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Transposable elements and the epigenetic regulation of the genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A genome-wide transcriptional activity survey of rice transposable element-related genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Differentiation of the two rice subspecies indica and japonica: a Gene Ontology perspective

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

TM4 microarray software suite

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

affy--analysis of Affymetrix GeneChip data at the probe level

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Signal-induced ubiquitination of IkappaBalpha by the F-box protein Slimb/beta-TrCP

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Origin, dispersal, cultivation and variation of rice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

Nucleocytoplasmic distribution is required for activation of resistance by the potato NB-LRR receptor Rx1 and is balanced by its functional domains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

A rice β-1,3-glucanase gene Osg1 is required for callose degradation in pollen development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1939-8433-6-19

Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.).

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4883688

Characterization of the genome expression trends in the heading-stage panicle of six rice lineages

25 November 2018

1 reference

12 December 2020

Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance

1 reference

12 December 2020

A transposon in tb1 drove maize domestication

1 reference

12 December 2020

Polysaccharide compositions of intervessel pit membranes contribute to Pierce's disease resistance of grapevines

1 reference

12 December 2020

Rice WRKY45 plays important roles in fungal and bacterial disease resistance

1 reference

12 December 2020

Identifiers

DOI

10.1186/1939-8433-6-19

1 reference

Dimensions Publication ID

6 November 2017

0 references

1 reference

6 November 2017

PubMed publication ID

24280533

1 reference